View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_39 (Length: 376)
Name: NF1371_high_39
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 8910107 - 8909824
Alignment:
| Q |
1 |
atctttgtaaatcttgttcaactgatttgagctaagagttaaagaagttgaaaaagttaatgattcaaggttcaaaccctagtgaaggagaagatactaa |
100 |
Q |
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| T |
8910107 |
atctttgtaaatcttgttcaactgatttgagctaagagttaaagaagttgaaaaagttaatgattcaaggttcaaaccctagtgaaggagaagatactaa |
8910008 |
T |
|
| Q |
101 |
cataacaattaatatgctgacatttgtctaccaannnnnnnnnnnnncttaccacaaatctttccttaatctcgttttattggttacttttcagagaatt |
200 |
Q |
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| T |
8910007 |
cataacaattaatatgctgacatttgtctaccaatttttatttttttcttaccacaaatctttccttaatctcgttttattggttacttttcagagaatt |
8909908 |
T |
|
| Q |
201 |
accaatatggctaagagaaattcccaacattatattcagatcagataatcaacctttcatggtggtttccctaactcatgatca |
284 |
Q |
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| T |
8909907 |
accaatatggctaagagaaattcccaacattatattcagatcagataatcaacctttcatggtggtttccctaactcatgatca |
8909824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 31951915 - 31951965
Alignment:
| Q |
70 |
gttcaaaccctagtgaaggagaagatactaacataacaattaatatgctga |
120 |
Q |
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| T |
31951915 |
gttcaaaccctagtgaaagagaaaatactaacataacaactaatatactga |
31951965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 26533821 - 26533878
Alignment:
| Q |
69 |
ggttcaaaccctagtgaaggagaagatactaacataacaattaatatgctgacatttg |
126 |
Q |
| |
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|
| T |
26533821 |
ggttcaagccctagcgaaggagaaaatactaacataacaactaatatactaacatttg |
26533878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 43675349 - 43675388
Alignment:
| Q |
69 |
ggttcaaaccctagtgaaggagaagatactaacataacaa |
108 |
Q |
| |
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| T |
43675349 |
ggttcaaaccatagtgaaggagaaaatactaacataacaa |
43675388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 11660575 - 11660546
Alignment:
| Q |
16 |
gttcaactgatttgagctaagagttaaaga |
45 |
Q |
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|
| T |
11660575 |
gttcaactgatttgagctaagagttaaaga |
11660546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 15165256 - 15165298
Alignment:
| Q |
18 |
tcaactgatttgagctaagagttaaagaagttgaaaaagttaa |
60 |
Q |
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| T |
15165256 |
tcaactgatttgagcttagagttaacgaagttgaaagagttaa |
15165298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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