View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_40 (Length: 374)
Name: NF1371_high_40
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 72 - 309
Target Start/End: Original strand, 14879277 - 14879514
Alignment:
| Q |
72 |
agcatgctacctacaatggattcgtcacgaagcttctatcttgttgaaacaatctcacctcgatttggtaaaattgctcgcggtgatattgtatgtttac |
171 |
Q |
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| T |
14879277 |
agcatgctacctacaatggattcgtcacgaagcttctatctttttgaaacaatctcacctcgatttggtaaaattgctcgcggtgatattgtatgtttac |
14879376 |
T |
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| Q |
172 |
gctctcctacaaaccctagagagagctacgtaaagcgcgtgattggattagagggtgatagcattacatatgttgctgatcgtggaaacggttataagcg |
271 |
Q |
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| T |
14879377 |
gctctcctacaaaccctagagagagctacgtaaagcgcgtgattggattagagggtgatagcattacatatgttgctgatcgtggaaacggttataagca |
14879476 |
T |
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| Q |
272 |
tgaaacagttttggtatggtcaatttcttgttaaataa |
309 |
Q |
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| T |
14879477 |
tgaagcagttctggtatggtcaatttcttgttaaataa |
14879514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 72 - 306
Target Start/End: Original strand, 14872054 - 14872288
Alignment:
| Q |
72 |
agcatgctacctacaatggattcgtcacgaagcttctatcttgttgaaacaatctcacctcgatttggtaaaattgctcgcggtgatattgtatgtttac |
171 |
Q |
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| T |
14872054 |
agcatgctacctacaattgattcgacaccaagcatgtttcttgctgaaagaatctcacctcgatttggtaaagttgctcacggagatattgtacgtttac |
14872153 |
T |
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| Q |
172 |
gctctcctacaaaccctagagagagctacgtaaagcgcgtgattggattagagggtgatagcattacatatgttgctgatcgtggaaacggttataagcg |
271 |
Q |
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| T |
14872154 |
gctctcctcaaaaccctagagaaagctacggaaagcgcgtgattggattagagggtgatagcattacatatattgctgatcgtggaaacggctataagca |
14872253 |
T |
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| Q |
272 |
tgaaacagttttggtatggtcaatttcttgttaaa |
306 |
Q |
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| T |
14872254 |
tgaaacagttgtggtatggtcaatttctggttaaa |
14872288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 296
Target Start/End: Original strand, 14898274 - 14898500
Alignment:
| Q |
72 |
agcatgctacctacaa-tggattcgtcacgaagcttctatcttgttgaaacaatctcacctcgatttggtaaaattgctcgcggtgatattgtatgttta |
170 |
Q |
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| T |
14898274 |
agcatgcttcctacaaatcgattcgacaccaagcatctttcttgctgaaaggatctcacctcgatttggcaaagttgctcgcggagatattttacattta |
14898373 |
T |
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| Q |
171 |
cgctctcctacaaaccctagagagagctacgtaaagcgcgtgattggattagagggtgatagcattacatatgttgctgatcgtggaaacggttataagc |
270 |
Q |
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||||||||| |||||||| | || || ||||||| || |||||||||||||||||| ||||||||||||| ||||| | ||||||| |||||| |
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| T |
14898374 |
cgctctcctcaaaaccctaaaaaggaaatcggaaagcgcttggttggattagagggtgataccattacatatgtttctgattccgaaaacggtgataagc |
14898473 |
T |
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| Q |
271 |
gtgaaacagttttggt-atggtcaatt |
296 |
Q |
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||| |||||| |||| |||||||||| |
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| T |
14898474 |
atgagacagttgtggtaatggtcaatt |
14898500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 14868262 - 14868311
Alignment:
| Q |
203 |
aaagcgcgtgattggattagagggtgatagcattacatatgttgctgatc |
252 |
Q |
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||||||| || ||||||||||||| |||| |||||||||||||||||||| |
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| T |
14868262 |
aaagcgcttggttggattagagggcgataccattacatatgttgctgatc |
14868311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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