View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_43 (Length: 361)
Name: NF1371_high_43
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_43 |
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| [»] scaffold0157 (2 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 36278 - 36455
Alignment:
| Q |
36 |
tcaaagactcttgaaaaccaatctcataccaaaaaagttaacattgctagttccatcttccaagatcagataattggaccctgtaaccttagttcatcca |
135 |
Q |
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| T |
36278 |
tcaaagactcttgaaaatcaatctcataccaaaaaagttaagattgctagttccatcttccaagatcagataactggaccctgtaaccttagttcatcca |
36377 |
T |
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| Q |
136 |
tatattatggtggccaagacatattgtatcctgctcagagtacaaagaatgcacgattaacctcattggtgagtggcc |
213 |
Q |
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| T |
36378 |
tatattatggtggccaagacatattgtatcctgctcagagtacaaagattgcacgattaaccttattggtgagtggcc |
36455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 36499 - 36547
Alignment:
| Q |
261 |
tatatcccatcctaacaaattgtatcaactacataattaaatcttagac |
309 |
Q |
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| T |
36499 |
tatatcccatcccaacaaattgtatcaactacataattaaatcttagac |
36547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 12484199 - 12484022
Alignment:
| Q |
36 |
tcaaagactcttgaaaaccaatctcataccaaaaaagttaacattgctagttccatcttccaagatcagataattggaccctgtaaccttagttcatcca |
135 |
Q |
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| T |
12484199 |
tcaaagactcttgaaaatcaatctcataccaaaaaagttaagattgctagttccatcttccaagatcagataactggaccctgtaaccttagttcatcca |
12484100 |
T |
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| Q |
136 |
tatattatggtggccaagacatattgtatcctgctcagagtacaaagaatgcacgattaacctcattggtgagtggcc |
213 |
Q |
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| T |
12484099 |
tatattatggtggccaagacatattgtatcctgctcagagtacaaagattgcacgattaaccttattggtgagtggcc |
12484022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 12465454 - 12465300
Alignment:
| Q |
47 |
tgaaaaccaatctcataccaaaaaagttaacattgctagttccatcttccaagatcagataattggaccctgtaaccttagttcatccatatattatggt |
146 |
Q |
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|||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
12465454 |
tgaaaatcaatctcataccaacaaagttaaggttactagttccatcttccaagatcagataattggaccatgtaacctcagttcatccatatattatggt |
12465355 |
T |
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| Q |
147 |
ggccaagacatattgtatcctgctcagagtacaaagaatgcacgattaacctcattggtgagtg |
210 |
Q |
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| T |
12465354 |
ggccaagacatactttatcctgctc---------agaatgcacgattaacctcattggtgagtg |
12465300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 12483978 - 12483930
Alignment:
| Q |
261 |
tatatcccatcctaacaaattgtatcaactacataattaaatcttagac |
309 |
Q |
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| T |
12483978 |
tatatcccatcccaacaaattgtatcaactacataattaaatcttagac |
12483930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 12465244 - 12465196
Alignment:
| Q |
261 |
tatatcccatcctaacaaattgtatcaactacataattaaatcttagac |
309 |
Q |
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| T |
12465244 |
tatatcccatcccaacaaattgtatcagctacataattaaatcttagac |
12465196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 6206394 - 6206473
Alignment:
| Q |
107 |
aattggaccctgtaaccttagttcatccatatattatggtggccaagacatattgtatcctgctcagagtacaaagaatg |
186 |
Q |
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| T |
6206394 |
aattggaccatgtaatctcagctcatcaatattttatggtggccaagacataatttatcctgctcagagttcacagaatg |
6206473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 33050341 - 33050372
Alignment:
| Q |
11 |
cacagagaccacacagttaagcttgtcaaaga |
42 |
Q |
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| T |
33050341 |
cacagagaccacacagttaagcttgtcaaaga |
33050372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 6215940 - 6215978
Alignment:
| Q |
121 |
accttagttcatccatatattatggtggccaagacatat |
159 |
Q |
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| T |
6215940 |
accttagttcatcaatctattatggtggccaagacatat |
6215978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 42764367 - 42764398
Alignment:
| Q |
11 |
cacagagaccacacagttaagcttgtcaaaga |
42 |
Q |
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| T |
42764367 |
cacagagaccacacagttaagcttgtcaaaga |
42764398 |
T |
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