View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1371_high_49 (Length: 329)
Name: NF1371_high_49
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_49 |
 | |
|
| [»] scaffold0707 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 33571084 - 33571319
Alignment:
| Q |
3 |
tatatttgctgcatttgtgnnnnnnntcttattaagttaatgaagtttgggtatgaaacattggaaaagatgtgcattctggattttgatattttctttg |
102 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571084 |
tatattttctgcatttgtgaacaaaatcttattaagttaatgaagtttgggtatgaaacattggaaaagatgtgcattctggattttgatattttctttg |
33571183 |
T |
|
| Q |
103 |
ttttaaagattatgtcaaagtcatacagacttaaatatagtatttgaatgttatgataggcaaaaggtgcatttcttctacagaataaaagattttattc |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571184 |
ttttaaagattatgtcaa-gtcatacagacttaaatatagtatttgaatgttatgataggcaaaaggtgcatttcttctacagaataaaagattttattc |
33571282 |
T |
|
| Q |
203 |
cttatttatattgaactctttagtgataacagcttga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571283 |
cttatttatattgaactctttagtgataacagcttga |
33571319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 2571 - 2461
Alignment:
| Q |
129 |
agacttaaatatagtatttgaatgttatgataggcaaaaggtgcatttcttctacagaataaaagattttattccttatttatattgaactctttagtga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2571 |
agacttaaatatagtatttgaatgttatgataggcaaaaggtgcatttcttctacagaataaaagattttattccttatttatattgaactctttagtga |
2472 |
T |
|
| Q |
229 |
taacagcttga |
239 |
Q |
| |
|
||||||||||| |
|
|
| T |
2471 |
taacagcttga |
2461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University