View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1371_high_5 (Length: 623)
Name: NF1371_high_5
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 69 - 620
Target Start/End: Complemental strand, 29866719 - 29866167
Alignment:
| Q |
69 |
acaatgcaccaaaagagatttctttcttagtaaaaaagaaatgtatacgtataacttctcccaaccatgcatcaatgaaatacatgaattacattaactc |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29866719 |
acaatgcaccaaaagagatttctttcttagtaaaaaagaaatgtatacgtataacttctcccaaccatgcatcaatgaaatacatgaattacattaactc |
29866620 |
T |
|
| Q |
169 |
aaagtacatatatatgtccttccagtcaaagtacatgaaacctaaactatggtgcattttgctctagaataacttaaccgtgtggtgaaacctaaatatc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29866619 |
aaagtacatatatatgtccttccagtcaaagtacatgaaacctaaactatggtgcattttgctctagaataacttaaccgtgtggtgaaacctaaatatc |
29866520 |
T |
|
| Q |
269 |
taacctaaactaattaatgtagtactttatgtgtagggtttgtgaagtaattgatcatattgaggcaatacagattaccaaatcattattgatgattcac |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29866519 |
taacctaaactaattaatgtagtactttatgtgtagggtttgtgaagtaattgatcatattgaggcaagacagattaccaaatcattattgatgattcac |
29866420 |
T |
|
| Q |
369 |
tcatatttgtgtttaggtcagagtttctaaaaggacattgaaggatatttttgtttctctctatttgttggaaggtagaaggc-aagtgtagaaaaggta |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29866419 |
tcatatttgtgtttaggtcagagtttctaaaaggacattgaaggatatttttgtttctctctatttgttggaaggtagaaggcaaagtgtagaaaaggta |
29866320 |
T |
|
| Q |
468 |
gtgaaaatatgtagttggtaatgtgggaccttgcgcagtgtgaaaatcgggttggcagaatgggctttgtgggttgaaacaaccctaaactcatacaatt |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29866319 |
gtgaaaatatgtagttggtaatgtgggaccttgcgcagtgtgaaaattgggttggcagaatgggctttgtgggttgaaacaaccctaaactcatacaatt |
29866220 |
T |
|
| Q |
568 |
tgggacccaccataccgagtcacgtgagccttaaataccagaataatctaccc |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |
|
|
| T |
29866219 |
tgggacccaccataccgagtcacgtgagccttaaatagcagaaaaatttaccc |
29866167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 31644 times since January 2019
Visitors: 1224