View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_57 (Length: 298)
Name: NF1371_high_57
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_57 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 3990021 - 3990298
Alignment:
| Q |
1 |
taattaatttacccttggtcatatattagaagaaaataacctcatctcctttacgacaaatcacaaactcacaagagtttgttcccattcaacctaaatt |
100 |
Q |
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| T |
3990021 |
taattaatttacccttggtcatatattagaagaaaataacttcatctcctttacgacaaatcacaaactcagaagagtttgttcccattcaacctaaatt |
3990120 |
T |
|
| Q |
101 |
gttccaat-ccttctcttcattcttcaatatgaaattcacaaaactatgcgtgaaacccatttaattccttctttaattcattcttctcttccttcttca |
199 |
Q |
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| T |
3990121 |
gttccaatcccttctcttcattcttcgatatgaaattcacaaaactatgcgtgaaatcca------------tttaattcattcttctcttccttcttca |
3990208 |
T |
|
| Q |
200 |
acatgactcagagatctgtgaaacctatttctcaattgtgtgatttacaacactgacatctcttttttaatgaaattacatcacctatgct |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |
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| T |
3990209 |
acatgactcagagatctgtgaaacctatttctcaattgtgtgatttacaacactaacatctc-tttttaatgaaattacattacctatgct |
3990298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 77 - 282
Target Start/End: Original strand, 3800660 - 3800866
Alignment:
| Q |
77 |
gtttgttcccattcaacctaaattgttccaatcc-ttctcttcattcttcaatatgaaattcacaaaactatgcgtgaaacccatttaattccttcttta |
175 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3800660 |
gtttgttcccattcaaccttaattgttccaatcccttctcttccttcttcaatatgaaattcacaaaactatgcatgaaacccatttaattccttcttta |
3800759 |
T |
|
| Q |
176 |
attcattcttctcttccttcttcaacatgactcagagatctgtgaaacctatttctcaattgtgtgatttacaacactgacatctcttttttaatgaaat |
275 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3800760 |
attcattcttctcttccttcttgaacatgactcagagatctgtgaaacttatttctcaactgtgtgatttacaacactgacatctcttttttaatgaaat |
3800859 |
T |
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| Q |
276 |
tacatca |
282 |
Q |
| |
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||||||| |
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| T |
3800860 |
tacatca |
3800866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 3800618 - 3800655
Alignment:
| Q |
22 |
tatattagaagaaaataacctcatctcctttacgacaa |
59 |
Q |
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| T |
3800618 |
tatattagaagaaaataacttcatctcctttacgacaa |
3800655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 25066872 - 25066650
Alignment:
| Q |
16 |
tggtcatatattagaagaaaataacctcatctcctttacgacaaatcacaaactcacaagagtttgttcccattcaacctaaattgttccaatcc-ttct |
114 |
Q |
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|||||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||| ||||||| |||| |||||||||||||||||||| |||| |
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| T |
25066872 |
tggtcatatattagaagaaaataatttcatatcctttacgagaaatcacaaactcggaagggtttgttgtcatttaacctaaattgttccaatcctttct |
25066773 |
T |
|
| Q |
115 |
cttcattcttcaatatgaaattcacaaaactatgcgtgaaacccatttaattccttctttaattcattcttctcttccttcttcaacatgactcagagat |
214 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| || |
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| T |
25066772 |
cttccttcttcaatctgaaattcacaaaactatgcgtgaaaccaatataattcc------------ttcttctcttccttcttcaacatgactcagaaat |
25066685 |
T |
|
| Q |
215 |
ctgtgaaacctatttctcaattgtgtgatttacaa |
249 |
Q |
| |
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|| ||||||| |||||||||||||||||||||||| |
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| T |
25066684 |
ctatgaaacccatttctcaattgtgtgatttacaa |
25066650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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