View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1371_high_59 (Length: 278)
Name: NF1371_high_59
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_59 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 4626601 - 4626697
Alignment:
| Q |
141 |
tatacctggtgtatgggcaaatatatcccatgtaccctttcctcttccgtcttcacttacagcaccttcatactacattatcaacacaaaaattata |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4626601 |
tatacctggtgtatgggcaaatatatcccatgtaccctttcctcttccgtcttcacttacagcaccttcatactacattatcaacacaaaaattata |
4626697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 4604404 - 4604495
Alignment:
| Q |
141 |
tatacctggtgtatgggcaaatatatcccatgtaccctttcctcttccgtcttcacttacagcaccttcatactacattatcaacacaaaaa |
232 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
4604404 |
tatacctggtgtatgggaagctatatcccatgtaccttttcctcttccgccttcacttacagcaccttcatactatattatcaacacgaaaa |
4604495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 4626014 - 4626059
Alignment:
| Q |
57 |
atatatatatttgtcgttgtttatgtttcttttcttcaatatctaa |
102 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4626014 |
atatatatatttgtcgttgtttctgtttcttttcttcaatatctaa |
4626059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 25019934 - 25019983
Alignment:
| Q |
180 |
tcctcttccgtcttcacttacagcaccttcatactacattatcaacacaa |
229 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
25019934 |
tcctcttccaccttcatttgcagcaccttcatactacattatcaacacaa |
25019983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 25041632 - 25041691
Alignment:
| Q |
180 |
tcctcttccgtcttcacttacagcaccttcatactacattatcaacaca-aaaattatat |
238 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
25041632 |
tcctcttccaccttcatttgcagcaccttcatactatattatcaacacagaaaattatat |
25041691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 18793811 - 18793763
Alignment:
| Q |
178 |
tttcctcttccgtcttcacttacagcaccttcatactacattatcaaca |
226 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
18793811 |
tttcctcttccgtcttcatttacagcaccttcgtactacattattaaca |
18793763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 3599824 - 3599783
Alignment:
| Q |
191 |
cttcacttacagcaccttcatactacattatcaacacaaaaa |
232 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
3599824 |
cttcatttgcagcatcttcatactacattatcaacacaaaaa |
3599783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5242 times since January 2019
Visitors: 5925