View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_6 (Length: 592)
Name: NF1371_high_6
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 30 - 579
Target Start/End: Original strand, 40651951 - 40652508
Alignment:
| Q |
30 |
taaaggtcatatttcaagagtagaatttcaatacttgaatatgattaatcgttcgtaatccagaactttaatcatcaatcagttcataaaatacataata |
129 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40651951 |
taaaggtcatatctcaagagtagaatttcaatacttgaatatgattaatcgttcataatccagaactttaatcatcaatcagttcataaaatacataata |
40652050 |
T |
|
| Q |
130 |
aactctaaccaggttaggaaaataaggcagtgtaacattctttttcataactcacggtcaaagctgtcgcaaacaaatcaccattatgcattatcatgca |
229 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40652051 |
aactctaaccaggttaggaaaataagacagtgtaacattctttttcataactcacggtcaaagctgtcgcaaacaaatcaccattatacattatcatgca |
40652150 |
T |
|
| Q |
230 |
gtaccaagtggtacatatggaacaaacttataaccaaatttcaacattacat--------tactcacaaaatagacggcacactcctatacgttgtctga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
40652151 |
gtaccaagtggtacatatggaacaaacttataaccaaatttcaacattacatcattagattactcacaaaatagacggcacactcctatacgctgtctga |
40652250 |
T |
|
| Q |
322 |
agctgcaaaaaagacatatataatataactgattgattaactatccaccaaacattttatgagagctttaactttgcccttacatgacctttagaaatct |
421 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40652251 |
agctgcaaaaaagacatatgtaatgtaactgattgattaactacccaccaaacattttatgagagctttaactttgcccttacatgacctttagaaatct |
40652350 |
T |
|
| Q |
422 |
gaaattgttcggttatacctaaatgagccatcaaaagccagacatgggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctaca |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40652351 |
gaaattgttcggttatacctaaatgagccatcaaaagccagacatgggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctaca |
40652450 |
T |
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| Q |
522 |
ttggcttgcggcatgacacaacatctccacccaaacatgacttatcatttcccatttc |
579 |
Q |
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| T |
40652451 |
ctggcttgcggcatgacacaacatctccacccaaacatgacttatcatttcccatttc |
40652508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 367 - 579
Target Start/End: Original strand, 40643626 - 40643838
Alignment:
| Q |
367 |
caccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagccagacat |
466 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
40643626 |
caccaaacactttatgagagcttcaactttgcccttacatgacccttagaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagacat |
40643725 |
T |
|
| Q |
467 |
gggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacattggcttgcggcatgacacaacatctccacccaaacatgacttat |
566 |
Q |
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||||||||||||||||||| ||| | |||||| ||||||| ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
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| T |
40643726 |
gggtaagcaactcaccaccctggctaagttgcctagcatgatgaagccctctacattgacttgctgcatgacacagcatctccacccaaacatgacttat |
40643825 |
T |
|
| Q |
567 |
catttcccatttc |
579 |
Q |
| |
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||||||||||||| |
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| T |
40643826 |
catttcccatttc |
40643838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 372 - 579
Target Start/End: Original strand, 40642441 - 40642648
Alignment:
| Q |
372 |
aacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagccagacatgggta |
471 |
Q |
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|||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40642441 |
aacattttataagaacgtcaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagctagacatgggta |
40642540 |
T |
|
| Q |
472 |
agcaactcaccaccttgggtgagttgcttagcatgttgaagtcctctacattggcttgcggcatgacacaacatctccacccaaacatgacttatcattt |
571 |
Q |
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|| ||||| ||||| ||| | || ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
40642541 |
agaaactcgccaccctggctaagctgcttagcatgatgaagtcctctacattggctagctgcatgacacaacatctccacccaaacatgacttatcattt |
40642640 |
T |
|
| Q |
572 |
cccatttc |
579 |
Q |
| |
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|||||||| |
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| T |
40642641 |
cccatttc |
40642648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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