View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_60 (Length: 277)
Name: NF1371_high_60
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 7662135 - 7661899
Alignment:
| Q |
30 |
tcattcactatcaaagaaatataggaaatgctcatgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7662135 |
tcattcactatcaaagaaatataggaaatgctcatgttgttgccattgcagctcttagtagccagaatccaggaggtatcactattggtaatgcaatgtt |
7662036 |
T |
|
| Q |
130 |
tggggctacacctgagatagctagtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattggg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7662035 |
tggggctacacctgagatagctagtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattggg |
7661936 |
T |
|
| Q |
230 |
tgtgattttgatatttttgtttgtttgtatgtttcat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7661935 |
tgtgattttgatatttttgtttgtttgtatgtttcat |
7661899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 11680925 - 11680688
Alignment:
| Q |
30 |
tcattcactatcaaagaaatataggaaatgctcatgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtt |
129 |
Q |
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|||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
11680925 |
tcattcactatcaaagaaatattggatacaacaatgttgttgccattgctgctcttagtagccagaatccaggagctataactattggcaatgcagtgtt |
11680826 |
T |
|
| Q |
130 |
tggggctacacctgagatagctagtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattggg |
229 |
Q |
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| T |
11680825 |
tggggctacacctgaaatagctagcgaagttctcattatggcttttcaattggacaagaatgccatcaattacttgcagtcgaagttttaaaatattggg |
11680726 |
T |
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| Q |
230 |
tgtgattttga-tatttttgtttgtttgtatgtttcat |
266 |
Q |
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| || || | | |||||||||||||||||||||||| |
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| T |
11680725 |
agggaattcaactgtttttgtttgtttgtatgtttcat |
11680688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 11720168 - 11719930
Alignment:
| Q |
30 |
tcattcactatcaaagaaatataggaaatgctcatgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtt |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| |||||| |||| |
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| T |
11720168 |
tcattcactatcaaagaaatattggaaattgtaatgttgttgctattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtgtt |
11720069 |
T |
|
| Q |
130 |
tggggctacacctgagatagctagtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattggg |
229 |
Q |
| |
|
||||||||||||||| ||||| |||||||| || | ||||||||| |||||||||||| | ||||||||||| |||||||||||||||| ||||||| |
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| T |
11720068 |
tggggctacacctgaaatagcaagtgaagtgctcatcaaggcttttaaattggacaagaatgccatcaattacttacagtcaaagttttagaatattggg |
11719969 |
T |
|
| Q |
230 |
tgtg--attttgatatttttgtttgtttgtatgtttcat |
266 |
Q |
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| | ||| | | |||||||||||||||||||||||| |
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| T |
11719968 |
agggaaattcagctctttttgtttgtttgtatgtttcat |
11719930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 11693816 - 11694013
Alignment:
| Q |
32 |
attcactatcaaagaaatataggaaatgctcatgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtttg |
131 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||||||||| ||||||| |||| |||||||||||||||| |||||||| |||||| |||||| |
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| T |
11693816 |
attcactatcaaagaaatattggatacaacaatgttgttgccattgctgctcttactagcaagaatccaggagctataactattggcaatgcagtgtttg |
11693915 |
T |
|
| Q |
132 |
gggctacacctgagatagctagtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattggg |
229 |
Q |
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||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||| |
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| T |
11693916 |
gggctacacctgaaatagctagcgaagttctcattaaggcttttcaattggacaagaatgccatcaattacttgcagtcgaagttttagaatattggg |
11694013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 11729282 - 11729046
Alignment:
| Q |
30 |
tcattcactatcaaagaaatataggaaat--gctcatgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatg |
127 |
Q |
| |
|
|||||||||||||||||||||| ||| || | | |||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| || |
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| T |
11729282 |
tcattcactatcaaagaaatattggatatatgacaacgttgttgccattgctgctcttagtagtcagaatccaggagctataactattggcaatgcagtg |
11729183 |
T |
|
| Q |
128 |
tttggggctacacctgagatagctagtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttagattattg |
227 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||| || ||||||||||| ||| |||||||||| ||||| |
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| T |
11729182 |
tttggggctgcacctgaaatagctagtgaagttctcattaagtcttttaaattggacaagac---taccaattacttgctgtccaagttttagaatattg |
11729086 |
T |
|
| Q |
228 |
ggtgtg-attttgatatttttgtttgtttgtatgtttcat |
266 |
Q |
| |
|
|| | | ||| | | |||||||||||||||||||||||| |
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| T |
11729085 |
ggagggaattcagctgtttttgtttgtttgtatgtttcat |
11729046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 11672038 - 11671847
Alignment:
| Q |
30 |
tcattcactatcaaagaaatataggaaatgctcatgttgttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtt |
129 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||| |||| || || |||||||||||||||||||| ||||||||||||||||| |||||| |||| |
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| T |
11672038 |
tcattcactatcaaagaaatatcggacatgacaatgttattgcaatcgctgctcttagtagccagaatccgggagctatcactattggcaatgcagtgtt |
11671939 |
T |
|
| Q |
130 |
tggggctacacctgagatagctagtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagtcaaagttttaga |
221 |
Q |
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||| ||||||||||| |||||||||||||| ||| ||||||||||||| |||| |||| | ||||| || |||||||| |||||||||| |
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| T |
11671938 |
tggtgctacacctgaaatagctagtgaagtgcttattaaggcttttcagctggagaagaatgccatcaactatttgcagtctaagttttaga |
11671847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 11712889 - 11712959
Alignment:
| Q |
69 |
ttgccattgcagctcttagtagccagaatccaggagctatcactattggtaatgcaatgtttggggctaca |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |
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|
| T |
11712889 |
ttgccattgctgctcttagtagccagaatccaggagctatcactattggcaatgaagtgtttggggctaca |
11712959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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