View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1371_high_65 (Length: 270)
Name: NF1371_high_65
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_65 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0141 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 48 - 270
Target Start/End: Complemental strand, 8432368 - 8432146
Alignment:
| Q |
48 |
caaaatgttcagagtagccacaacagtggcgctgtagcactgttgcataggagatttttaacattctgcttttttgtgctatccgctattgatagcattg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8432368 |
caaaatgttcagagtagccacaacagtggcgctgtagcactgttgcataggagatttttaacattctgcttttttgtgctatccgctattgatagcattg |
8432269 |
T |
|
| Q |
148 |
gccaaaagacaaaacaagcaaactatgcttaactacagtttaccgaaaatggtttataattgcttcttcctcatttatttttatcgttgatctttggttg |
247 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8432268 |
gccaaatgacaaaacaagcaaactatgcttaactatagtttaccgaaaatggtttataattgcttcttcctcatctatttttatcgttgatctttggttg |
8432169 |
T |
|
| Q |
248 |
aagttcagagctataaagatcac |
270 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8432168 |
aagttcagagctataaagatcac |
8432146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 8431054 - 8430902
Alignment:
| Q |
50 |
aaatgttcagagtagccacaacagtggcgctgtagcactgttgcataggagatttttaacattctgcttttttgtgctatccgctattgatagcattggc |
149 |
Q |
| |
|
|||||||||||||| || | ||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||| | ||||| |
|
|
| T |
8431054 |
aaatgttcagagtaaccgctacagtggcgctatagaactgttgcataggagaattttaacattc----------tgctatccgctattgacaacattgat |
8430965 |
T |
|
| Q |
150 |
caaaagacaaaacaagcaaactatgcttaactacagtttaccgaaaatggtttataattgctt |
212 |
Q |
| |
|
|||| |||||||||||| |||| || |||||||||| ||||| | |||||||| ||||||||| |
|
|
| T |
8430964 |
caaatgacaaaacaagctaactgtgtttaactacaggttaccaacaatggtttctaattgctt |
8430902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 47881516 - 47881573
Alignment:
| Q |
90 |
ttgcataggagatttttaacattctgcttttttgtgctatccgctattgatagcattg |
147 |
Q |
| |
|
|||||||| || |||||||| || |||||||| |||||||||||||||| ||||||| |
|
|
| T |
47881516 |
ttgcatagaggaattttaacaatccgcttttttctgctatccgctattgacagcattg |
47881573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 6546 - 6631
Alignment:
| Q |
124 |
tgctatccgctattgatagcattggccaaaagacaaaacaagcaaactatgcttaactacagtttaccgaaaatggtttataattgctt |
212 |
Q |
| |
|
|||||||||||||||| | |||||| |||| |||||||||||| |||| |||||||||| ||| | | |||||||| ||||||||| |
|
|
| T |
6546 |
tgctatccgctattgacaacattggtcaaatgacaaaacaagctaact---gttaactacaggttatcaacaatggtttctaattgctt |
6631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University