View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_70 (Length: 256)
Name: NF1371_high_70
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_70 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 13932342 - 13932599
Alignment:
| Q |
13 |
aatatataagaattaaaactaaaatgacacaaacaatccaccactcaataaacttttgtggcaattg--------------acttatagtctactctcgt |
98 |
Q |
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| T |
13932342 |
aatatataagaattaaaactaaaatgacacaaacaatccaccactcaataaacttttgtggcaattatagaatttattacaacttatagtctactcgcgt |
13932441 |
T |
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| Q |
99 |
tgcattttcttctacgctgcatttattttcaaactgatttctgtagctattcttactttggtgaactaagttatggcgactattgtggtagaagcacttc |
198 |
Q |
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| T |
13932442 |
tgcattttcttctacgctgcatttatcttcaaactgatttctgcagctattcttactttggagaactaagttatggcgactattgtggtagaagcacttc |
13932541 |
T |
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| Q |
199 |
tttcagcttctttggagctgttgttgnnnnnnnttgttgctgaagatttcgtggattt |
256 |
Q |
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| T |
13932542 |
tttcagcttctttggagctgttgttgaaaaaaattgttgctgaagatttcgtggattt |
13932599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 80 - 256
Target Start/End: Complemental strand, 4061604 - 4061427
Alignment:
| Q |
80 |
acttatagtctactctcgttgcattttcttctacgctgcatttattttcaaactgatttctgtagctattcttactttggtg-aactaagttatggcgac |
178 |
Q |
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| T |
4061604 |
acttatagtctactcgcgttacattttcttctacgctacttttattttcaaactgatttctgtacctattcttactttggtgaaactaagttatggcgac |
4061505 |
T |
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| Q |
179 |
tattgtggtagaagcacttctttcagcttctttggagctgttgttgnnnnnnnttgttgctgaagatttcgtggattt |
256 |
Q |
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| T |
4061504 |
tattgtggtagaagcacttctttcagctactttggatctgttgttgaaaaaaattgttgctgaagatttcgtggattt |
4061427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 4116011 - 4115949
Alignment:
| Q |
145 |
ctattcttactttggtgaactaagttatggcgactattgtggtagaagcacttctttcagcttct |
209 |
Q |
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| T |
4116011 |
ctattcttactt--gtgaactaagttatggcaactgttgtgggagaagcacttctttcagcttct |
4115949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 4129085 - 4129130
Alignment:
| Q |
169 |
ttatggcgactattgtggtagaagcacttctttcagcttctttgga |
214 |
Q |
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| T |
4129085 |
ttatggcgactattgtgggagaagcacttcttgcagcttctttgga |
4129130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 4093255 - 4093205
Alignment:
| Q |
159 |
gtgaactaagttatggcgactattgtggtagaagcacttctttcagcttct |
209 |
Q |
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| T |
4093255 |
gtgaactaagttatggcgactattgtgggagaagggattctttcagcttct |
4093205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 4066909 - 4066869
Alignment:
| Q |
38 |
gacacaaacaatccaccactcaataaacttttgtggcaatt |
78 |
Q |
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| T |
4066909 |
gacacaaacaatcaacgactcaataaacttttgtggcaatt |
4066869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 4067093 - 4067061
Alignment:
| Q |
13 |
aatatataagaattaaaactaaaatgacacaaa |
45 |
Q |
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| T |
4067093 |
aatatataagaattaaaactaaaatgactcaaa |
4067061 |
T |
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