View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_77 (Length: 251)
Name: NF1371_high_77
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_77 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7990189 - 7990431
Alignment:
| Q |
1 |
gcaattttgtcggggtaactcaagttgcagaaaatctatatggtttctgcttgctggttgtaatttgaaatcatgttgtaggaattatcttaatctatga |
100 |
Q |
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| T |
7990189 |
gcaattttgtcggggtaactcaagttgcagaaaatctatatggtttctgcttgctggttgtaatttgaaatcatgttgtaggaattatcttaatctatga |
7990288 |
T |
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| Q |
101 |
tatcatctatgatgtgggagtgctataatgaaatctttgttatcatatctc-ttaagtgcttaaaattttaagtcaaatacttgaatatcctttgcatat |
199 |
Q |
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| T |
7990289 |
tatcatctatgatgtgggagtgctataatgaaatctttgttatcatatctctttaagtgcttaaaattttaagtcaaatacttgaatatcctttgcatat |
7990388 |
T |
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| Q |
200 |
ttacattctttcttctttagatttttcaattgatgagtataat |
242 |
Q |
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| T |
7990389 |
ttacattcttacttctttagatttttcaattgatgagtataat |
7990431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 40616386 - 40616206
Alignment:
| Q |
62 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcatctatgatgtgggagtgctataatgaaatctttgttatcatatctcttaagtgctt |
161 |
Q |
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| T |
40616386 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatcatatctcttaagtgttt |
40616287 |
T |
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| Q |
162 |
aaaattttaagtcaaatacttgaatatcctttgcatatttacattctttcttctttagatttttcaattgatgagtataat |
242 |
Q |
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| T |
40616286 |
ataattttaagtcaaatacttaaatatcctttgcatttatacattcttacttctttagattttttaattgatgagtataat |
40616206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 5032063 - 5032251
Alignment:
| Q |
54 |
ctggttgtaatttgaaatcatgttgtaggaattatcttaatctatgatatcatctatgatgtgggagtgctataatgaaatctttgttatcatatctctt |
153 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||| ||||| ||||||| |||||||| ||| |
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| T |
5032063 |
ctggttgtaatttaaaatcatgttgtagaaattatcttaatctatgatattatccatgatgtgggagtgttatgatgaagtctttgtcatcatatccctt |
5032162 |
T |
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| Q |
154 |
aagtgcttaaaattttaagtcaaatacttgaatatcctttgcatatttacattctttcttctttagatttttcaattgatgagtataat |
242 |
Q |
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| T |
5032163 |
aagtgcttaaaattttaagtcaaatacttgaatatcctttgcatttttacattcatgcttctttagatttttcaattgatgagtataat |
5032251 |
T |
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