View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_8 (Length: 549)
Name: NF1371_high_8
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 8910083 - 8910557
Alignment:
| Q |
1 |
tcagttgaacaagatttacaaagatcagtggtattaattcaaatatttggatgaaacttattttggatgaactcattggtcttctcatacggagtcaatc |
100 |
Q |
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| T |
8910083 |
tcagttgaacaagatttacaaagatcagtggtattaattcaaatatttggatgaaacttattttggatgaactcattggtcttctcatacggagtcaatc |
8910182 |
T |
|
| Q |
101 |
ttgctcaagaaagcgtcacacaatgaacgtatatgtctctatcaacaaagttcaacccgtggttcgccacactggaggaataattaacctttctgtttga |
200 |
Q |
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| T |
8910183 |
ttgctcaagaaagcgtcacacaatgaacgtatatgtctctatcgacaaagttcaactcgtggttcgccacactggaggaataa----cctttctgtttga |
8910278 |
T |
|
| Q |
201 |
ctcaaccctcgttagtatttggacgaaaaatttgaatcaacaaagaatatggccttacccataatttcattatgcttcaatgaatggaccagctctaagt |
300 |
Q |
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| T |
8910279 |
ctcaaccctcgttagtatttggacgaaaaatttgaatcaacaaagaatatggccttacccataatttcattatgcttcaatgaatggaccaactctaagt |
8910378 |
T |
|
| Q |
301 |
gttgcatacatatcatgatcccaatcatctttataaattttattaaatcgtaatttccttcaaaattgaactgcacataataacaaaaaattgttagcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8910379 |
gttgcatacatatcatgatcccaatcatctttataaattttattaaatcgtaatttccttcaaaattgaactgcacataataacaaaaaattgttagcaa |
8910478 |
T |
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| Q |
401 |
tagcttattacaatccaagtaaatatatcaaatttggtcttaaaagatatgcagacattacatggccatgcacaggttc |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8910479 |
tagcttattacaatccaagtaaatatatcaaatttggtcttaaaagatatgcagacattacatggccatgcacaggttc |
8910557 |
T |
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