View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_low_102 (Length: 247)

Name: NF1371_low_102
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_low_102
NF1371_low_102
[»] chr6 (16 HSPs)
chr6 (17-127)||(2986761-2986871)
chr6 (19-127)||(2928127-2928235)
chr6 (19-123)||(2952983-2953087)
chr6 (129-229)||(3002848-3002960)
chr6 (19-96)||(2935663-2935740)
chr6 (169-229)||(2954967-2955027)
chr6 (169-229)||(2986612-2986672)
chr6 (169-226)||(2952838-2952895)
chr6 (169-223)||(2974890-2974944)
chr6 (19-68)||(2955324-2955373)
chr6 (51-123)||(2955220-2955292)
chr6 (169-210)||(2935508-2935549)
chr6 (173-226)||(2965404-2965457)
chr6 (85-130)||(3002775-3002820)
chr6 (169-229)||(2927989-2928051)
chr6 (171-208)||(2983761-2983798)
[»] scaffold0024 (3 HSPs)
scaffold0024 (22-123)||(33991-34092)
scaffold0024 (19-130)||(43290-43401)
scaffold0024 (169-226)||(34180-34237)
[»] chr7 (2 HSPs)
chr7 (19-97)||(3340056-3340134)
chr7 (169-229)||(3339881-3339941)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 2986871 - 2986761
Alignment:
Q  17 tcaattcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgtta 116  Q
    |||||||||| |||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||    
T  2986871 tcaattcacattcaaaaataattttgatttaaattatccaaacaacttgaataatgataaatcacttttcaattaaggtatcaaaacataaatcatgtta 2986772  T
Q  117 cattaaactca 127  Q
    |||||||||||    
T  2986771 cattaaactca 2986761  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 2928235 - 2928127
Alignment:
Q  19 aattcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttaca 118  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||| |||      
T  2928235 aattcacactcaaaagtaattttgatctaaattatctaaacaacttgaattatgaaaaatcacttttcaatcaaggtatcaaaacataagtcaccttaac 2928136  T
Q  119 ttaaactca 127  Q
    |||||||||    
T  2928135 ttaaactca 2928127  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 2953087 - 2952983
Alignment:
Q  19 aattcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttaca 118  Q
    ||||||| || ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| ||| |||  || ||||||||| | ||||    
T  2953087 aattcactcttaaaagtaattttgatctaaattctccaaacaacttgaattatgaaaaatcacttttcaatcaagatatccaaacataaatcatgataca 2952988  T
Q  119 ttaaa 123  Q
    |||||    
T  2952987 ttaaa 2952983  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 3002848 - 3002960
Alignment:
Q  129 ttcattcaaaaacaattattatcaccgtggaaccaaacacac------------attagtttggagtttctacctgcacccctagattttgccatccaca 216  Q
    ||||||||||||||||| |||||||||||||||||||| |||            ||||||||| |||||||||||||||||||||||||||||| |||||    
T  3002848 ttcattcaaaaacaattgttatcaccgtggaaccaaacgcacgcgagacacgacattagtttgaagtttctacctgcacccctagattttgccaaccaca 3002947  T
Q  217 ctatcagacccat 229  Q
    |||||||||||||    
T  3002948 ctatcagacccat 3002960  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 2935740 - 2935663
Alignment:
Q  19 aattcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggta 96  Q
    |||||||| ||||||  ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  2935740 aattcacattcaaaaacaattttgatctaaattatccaaacaacatgaattatgaaaaatcacttttcaatcaaggta 2935663  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 2955027 - 2954967
Alignment:
Q  169 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 229  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  2955027 acattagttaggagtttctacctgcaaccctagattttgccaaccacactatcagacccat 2954967  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 2986672 - 2986612
Alignment:
Q  169 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 229  Q
    ||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  2986672 acattagttaggagtttctagttgcacccctagattttgccaaccacactatcagacccat 2986612  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 2952895 - 2952838
Alignment:
Q  169 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 226  Q
    ||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||    
T  2952895 acattagttaggaatttctacctgcacccctagattttgccaacaacactatcagacc 2952838  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 2974944 - 2974890
Alignment:
Q  169 acattagtttggagtttctacctgcacccctagattttgccatccacactatcag 223  Q
    ||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||    
T  2974944 acattagttaggagtttctacctgcacccctagatttttccaacaacactatcag 2974890  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 2955373 - 2955324
Alignment:
Q  19 aattcacactcaaaagtaatttggatctaaattatccaaacaacttgaat 68  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  2955373 aattcacattcagaagtaattttgatctaaattatccaaacaacttgaat 2955324  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 2955292 - 2955220
Alignment:
Q  51 tatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaa 123  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||   | ||||||| | |||||||||||    
T  2955292 tatccaaaacacttgaattatgaaaaatcacttttcaattaaggtatcctaacataaattatgttacattaaa 2955220  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 2935549 - 2935508
Alignment:
Q  169 acattagtttggagtttctacctgcacccctagattttgcca 210  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  2935549 acattagttatgagtttctacctgcacccctagattttgcca 2935508  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 2965457 - 2965404
Alignment:
Q  173 tagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 226  Q
    ||||| |||||||||||||| | ||||||||||||||| | |||||||||||||    
T  2965457 tagttaggagtttctacctgaaaccctagattttgccaacaacactatcagacc 2965404  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 3002775 - 3002820
Alignment:
Q  85 tcaattaaggtattaaatcataaatcacgttacattaaactcattt 130  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||    
T  3002775 tcaattaaggtattaaaacataaatcatgttacactaaactcattt 3002820  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 2928051 - 2927989
Alignment:
Q  169 acattagtttggagtttctacctgcacccctaga--ttttgccatccacactatcagacccat 229  Q
    ||||||||  |||||||||||||||||||| |||  |||||||| |||| |||||||||||||    
T  2928051 acattagtcaggagtttctacctgcaccccaagattttttgccaaccacgctatcagacccat 2927989  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 2983798 - 2983761
Alignment:
Q  171 attagtttggagtttctacctgcacccctagattttgc 208  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  2983798 attagttaggagtttttacctgcacccctagattttgc 2983761  T

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Target: scaffold0024 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 33991 - 34092
Alignment:
Q  22 tcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacatta 121  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |||  ||  |||||||| |||||||||    
T  33991 tcacactcaaaagtaattttgatctaaattatccaaataacttgaattatgaaaaatcacttttcaatcaagctatccaaatataaatcatgttacatta 34090  T
Q  122 aa 123  Q
    ||    
T  34091 aa 34092  T

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Target: scaffold0024; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 43290 - 43401
Alignment:
Q  19 aattcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttaca 118  Q
    |||||||||| |||||| |||| |||| |||||||||||||||||||||| ||||||||||| |||||||| ||| |||| || |||||||||  ||| |    
T  43290 aattcacacttaaaagtcatttcgatcaaaattatccaaacaacttgaattatgaaaaatcatttttcaatcaagatattcaaacataaatcatattata 43389  T
Q  119 ttaaactcattt 130  Q
    ||||| ||||||    
T  43390 ttaaagtcattt 43401  T

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Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 34180 - 34237
Alignment:
Q  169 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 226  Q
    |||||| || ||||||||||| ||||||| |||||||||||| | |||||||||||||    
T  34180 acattacttaggagtttctacttgcacccgtagattttgccaacaacactatcagacc 34237  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 3340134 - 3340056
Alignment:
Q  19 aattcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtat 97  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||| | |||||||||| |||||||    
T  3340134 aattcacactcaaaagtaattttaatctaaattatccaaacaacttgaattatgaaaatttacttttcaatcaaggtat 3340056  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 3339941 - 3339881
Alignment:
Q  169 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 229  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||| | ||||||||||||    
T  3339941 acattagttaggagtttctacatgcacccctagattttgccaaccatattatcagacccat 3339881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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