View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_104 (Length: 244)
Name: NF1371_low_104
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_104 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 9939841 - 9939938
Alignment:
| Q |
147 |
ggtataatcgatggtgttggtgattgctaccnnnnnnntgtcgataccatacccaacataatagacgagtataatacctctatacttcaacaacaaaa |
244 |
Q |
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| T |
9939841 |
ggtataatcgatggtgttggtgattgctacgaaaaaaatgtcgataccatacccaacataatagacgagtataatacctctatacttcaacaacaaaa |
9939938 |
T |
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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 9939784 - 9939829
Alignment:
| Q |
23 |
cacataattgttaaaaatagttaaagcatcaagatgtacatctatt |
68 |
Q |
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| T |
9939784 |
cacataattgttaaaaatagttaaagcatcaagatgtacatctatt |
9939829 |
T |
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