View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_105 (Length: 234)
Name: NF1371_low_105
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_105 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 44635589 - 44635820
Alignment:
| Q |
1 |
cagatacaaactcacctattgccatgctacatgcaccagctacaagtccagcaaaacctgacaagatcatggcttttatgtcttgtttcactgctcctac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44635589 |
cagatacaaactcacctattgccatgctacatgcaccagctacaagtccagcaaaacctgacaagatcatggcttttatgtcttgtttcactgctcctac |
44635688 |
T |
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| Q |
101 |
acccatcattagtgatgctgttgaaactaatccatcattagctcctaaaaccgcggcacgtagccattgtgatctttttgagtaatcaaattcatcactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44635689 |
acccatcattagtgatgctgttgaaactaatccatcattagctcctaaaactgcggcacgtagccattgtgatctttttgagtaatcaaattcatcgctt |
44635788 |
T |
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| Q |
201 |
tcgatctctagtgttgcatattattggacatg |
232 |
Q |
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||||||||||||||||||| || |||| |||| |
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| T |
44635789 |
tcgatctctagtgttgcattttgttggtcatg |
44635820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 12281716 - 12281527
Alignment:
| Q |
1 |
cagatacaaactcacctattgccatgctacatgcaccagctacaagtccagcaaaacctgacaagatcatggcttttatgtcttgtttcactgctcctac |
100 |
Q |
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|||| ||||| ||||||||||||||||| |||||||| ||||| | || |||||||| | |||||||| ||||| |||||||| || ||||| || || |
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| T |
12281716 |
cagagacaaattcacctattgccatgctgcatgcaccggctaccaacccggcaaaaccggttaagatcattgctttgatgtcttgcttgactgcaccgac |
12281617 |
T |
|
| Q |
101 |
acccatcattagtgatgctgttgaaactaatccatcattagctcctaaaaccgcggcacgtagccattgtgatctttttgagtaatcaaa |
190 |
Q |
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| T |
12281616 |
acccatcattagcgaagctgtagagactaatccatcgttagcgcctaaaacagctgctcttagccattgtgatctttttgagtagtcaaa |
12281527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 13497 - 13673
Alignment:
| Q |
1 |
cagatacaaactcacctattgccatgctacatgcaccagctacaagtccagcaaaacctgacaagatcatggcttttatgtcttgtttcactgctcctac |
100 |
Q |
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|||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| || | | ||||| | || | |||| | | || || || || |
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| T |
13497 |
cagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaac |
13596 |
T |
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| Q |
101 |
acccatcattagtgatgctgttgaaactaatccatcattagctcctaaaaccgcggcacgtagccattgtgatcttt |
177 |
Q |
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|||||||||||| ||||||||||| | ||| ||||||||||| |||||||| || || | |||||||||| ||||| |
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| T |
13597 |
acccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctcttt |
13673 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 19177 - 19353
Alignment:
| Q |
1 |
cagatacaaactcacctattgccatgctacatgcaccagctacaagtccagcaaaacctgacaagatcatggcttttatgtcttgtttcactgctcctac |
100 |
Q |
| |
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|||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| || | | ||||| | || | |||| | | || || || || |
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| T |
19177 |
cagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaac |
19276 |
T |
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| Q |
101 |
acccatcattagtgatgctgttgaaactaatccatcattagctcctaaaaccgcggcacgtagccattgtgatcttt |
177 |
Q |
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|||||||||||| ||||||||||| | ||| ||||||||||| |||||||| || || | |||||||||| ||||| |
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| T |
19277 |
acccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctcttt |
19353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 1293097 - 1292921
Alignment:
| Q |
1 |
cagatacaaactcacctattgccatgctacatgcaccagctacaagtccagcaaaacctgacaagatcatggcttttatgtcttgtttcactgctcctac |
100 |
Q |
| |
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|||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| || | | ||||| | || | |||| | | || || || || |
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| T |
1293097 |
cagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaac |
1292998 |
T |
|
| Q |
101 |
acccatcattagtgatgctgttgaaactaatccatcattagctcctaaaaccgcggcacgtagccattgtgatcttt |
177 |
Q |
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|||||||||||| ||||||||||| | ||| ||||||||||| |||||||| || || | |||||||||| ||||| |
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| T |
1292997 |
acccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctcttt |
1292921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 37758154 - 37758230
Alignment:
| Q |
93 |
gctcctacacccatcattagtgatgctgttgaaactaatccatcattagctcctaaaaccgcggcacgtagccattg |
169 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||| || || || || |||||||| |
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| T |
37758154 |
gctcctacacccatcattagtgaagcaacagaaactaatccatcattagctcctaatacggctgcgcgaagccattg |
37758230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37742396 - 37742354
Alignment:
| Q |
1 |
cagatacaaactcacctattgccatgctacatgcaccagctac |
43 |
Q |
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|||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
37742396 |
cagaaacaaactcaccaattgccatgctacaagcaccagctac |
37742354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37749466 - 37749424
Alignment:
| Q |
1 |
cagatacaaactcacctattgccatgctacatgcaccagctac |
43 |
Q |
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|||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
37749466 |
cagaaacaaactcaccaattgccatgctacaagcaccagctac |
37749424 |
T |
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