View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_106 (Length: 234)
Name: NF1371_low_106
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 44635613 - 44635393
Alignment:
| Q |
1 |
atggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag---------------gtaataatattgaagaga |
85 |
Q |
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| T |
44635613 |
atggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagagacaatattgaaagaggtaataatattgaagaga |
44635514 |
T |
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| Q |
86 |
aagaaagtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttcattaaaga |
185 |
Q |
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| T |
44635513 |
aagaaagtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttcattaaaga |
44635414 |
T |
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| Q |
186 |
ttataaggtaagggtaggtgt |
206 |
Q |
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| T |
44635413 |
ttataaggtaagggtaggtgt |
44635393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 194
Target Start/End: Original strand, 12281790 - 12281906
Alignment:
| Q |
78 |
tgaagagaaagaaagtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttc |
177 |
Q |
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| T |
12281790 |
tgaagagaaagaaagtttacctaatcctctacaagctgcagctgcatcagctttagctttttctattggtgcaatggtgccattacttgcagcttttttt |
12281889 |
T |
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| Q |
178 |
attaaagattataaggt |
194 |
Q |
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| T |
12281890 |
ataagggattataaggt |
12281906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12281692 - 12281758
Alignment:
| Q |
1 |
atggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
67 |
Q |
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|||||||||||||| ||||| ||||| || |||||| | ||||||||| |||||||| | ||||||| |
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| T |
12281692 |
atggcaataggtgaatttgtctctgtgtactcacaattagacattgaagttgctcaaatgaaaagag |
12281758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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