View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_low_112 (Length: 210)

Name: NF1371_low_112
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_low_112
NF1371_low_112
[»] chr1 (1 HSPs)
chr1 (24-166)||(44635547-44635689)
[»] chr6 (1 HSPs)
chr6 (31-166)||(12281623-12281758)
[»] scaffold0119 (2 HSPs)
scaffold0119 (71-165)||(13456-13550)
scaffold0119 (71-165)||(19136-19230)
[»] chr2 (1 HSPs)
chr2 (71-165)||(1293044-1293138)
[»] chr4 (3 HSPs)
chr4 (82-166)||(37742354-37742438)
chr4 (82-166)||(37749424-37749508)
chr4 (82-166)||(37752280-37752364)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 44635689 - 44635547
Alignment:
Q  24 tgtaggagcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44635689 tgtaggagcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatct 44635590  T
Q  124 gtttattcacaacttgacattgaaattgctcaattaaaaagag 166  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44635589 gtttattcacaacttgacattgaaattgctcaattaaaaagag 44635547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 12281623 - 12281758
Alignment:
Q  31 gcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttatt 130  Q
    ||||| || |||||||| ||||| ||||||||  | |||||||| ||  | ||||| |||||||| ||||||||||||||||| ||||| ||||| || |    
T  12281623 gcagtcaagcaagacatcaaagcaatgatcttaaccggttttgccgggttggtagccggtgcatgcagcatggcaataggtgaatttgtctctgtgtact 12281722  T
Q  131 cacaacttgacattgaaattgctcaattaaaaagag 166  Q
    ||||| | ||||||||| |||||||| | |||||||    
T  12281723 cacaattagacattgaagttgctcaaatgaaaagag 12281758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 13550 - 13456
Alignment:
Q  71 ttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaaga 165  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||  ||| |||||| |||| ||| | ||||||    
T  13550 ttgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaaatgaaaaga 13456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 19230 - 19136
Alignment:
Q  71 ttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaaga 165  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||  ||| |||||| |||| ||| | ||||||    
T  19230 ttgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaaatgaaaaga 19136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 1293044 - 1293138
Alignment:
Q  71 ttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaaga 165  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||  ||| |||||| |||| ||| | ||||||    
T  1293044 ttgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaaatgaaaaga 1293138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 37742354 - 37742438
Alignment:
Q  82 gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag 166  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||||| | |||  ||||||||| || |||||  |||||||||    
T  37742354 gtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag 37742438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 37749424 - 37749508
Alignment:
Q  82 gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag 166  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||||| | |||  ||||||||| || |||||  |||||||||    
T  37749424 gtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag 37749508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 37752364 - 37752280
Alignment:
Q  82 gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag 166  Q
    ||||| ||||| |||||||||||||| ||||||||||| ||||||||| | |||  ||||||||| || |||||  |||||||||    
T  37752364 gtagcaggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag 37752280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University