View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_14 (Length: 505)
Name: NF1371_low_14
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 60 - 496
Target Start/End: Complemental strand, 42846217 - 42845781
Alignment:
| Q |
60 |
atccagaatgtaacgaattgggagtggtccctcgcagagcctagcaaagaaaacatggatgcggatgattttaaggagaagatgaaaatgaagggaaagt |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
42846217 |
atccagaatgtaacgaattgggagtggtccctcgcagagcctagcaaagaaaacatggatgcagatgattttaaggagatgatgaaaatgaagggaaagt |
42846118 |
T |
|
| Q |
160 |
gaaaagtatttagagacaacgaggatgacgagaatggtcgcatgcactccacacttttcattcccgatccccttatgctgagcatgaattattttgctta |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42846117 |
gaaaagtatttagagacaacgaggatgacgagaatggtcgcatgcactccacacttttcattcccgatccccttatgttgagcatgaattattttgctta |
42846018 |
T |
|
| Q |
260 |
gtcaggtgaaacatctctcagccacacaagatcagtagccctgtgtgcatcaacgagtagattcaggtaggaaactctgaataagttctgcaagcatgtt |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42846017 |
gtcaggtgaaacatctctcagccacacaagatcagtagccctgtgtgcatcaacgagtagattcaggtaggaaactctgaataagttctgcaagcatgtt |
42845918 |
T |
|
| Q |
360 |
atccatgcctctttctttgagtgctcagcaatttcattgacgtttgcacggctcatagcctcccagtacaaaaaatccattgtcatttctgtcttttctc |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42845917 |
atccatgcctctttctttgagtgctcagcaatttcattgacgtttgcacggctcatagcctcccagtacaaaaaatccattgtcatttctgtcttttctc |
42845818 |
T |
|
| Q |
460 |
tcttccctgccttagctgcttgtgcatgtatattctt |
496 |
Q |
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| T |
42845817 |
tcttccctgccttagctgcttgtgcatgtatattctt |
42845781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 42825492 - 42825334
Alignment:
| Q |
30 |
atgagtttgaccaatatctaaagggaaatgatccagaatgtaacgaattgggagtggtccctcgcagagcctagcaaagaaaacatggatgcggatgatt |
129 |
Q |
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||||||||||||| |||| |||||| | |||||| |||||| |||||||||||||| ||||| |||||||||||||||| ||||| |||||||| |
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| T |
42825492 |
atgagtttgaccagtatccaaagggca-tgatccggaatgtggagaattgggagtggttcctcgaggagcctagcaaagaaagtgaggatgaggatgatt |
42825394 |
T |
|
| Q |
130 |
ttaaggagaagatgaaaatgaagggaaagtgaaaagtatttagagacaacgaggatgacg |
189 |
Q |
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|| ||||||| | |||||| ||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
42825393 |
ttgaggagaaaaggaaaataaagggaaagcggaaagtatttagagacaacgaggatgacg |
42825334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 476
Target Start/End: Complemental strand, 41980056 - 41979923
Alignment:
| Q |
344 |
gttctgcaagcatgttatccatgcctctttctttgagtgc-tcagcaatttcattgacgtttgcacggctcatagcctcccagtacaaaaaatccattgt |
442 |
Q |
| |
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|||| ||||||||||| | |||||| || ||||||| ||| ||||||||||| ||||||||||| || |||| ||| ||||||| ||| | ||||| | |
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| T |
41980056 |
gttcagcaagcatgttgttcatgcccctctctttgattgcatcagcaatttccttgacgtttgcccgtctcacagcttcccagtccaatgagtccatgtt |
41979957 |
T |
|
| Q |
443 |
catttctgtcttttctctcttccctgccttagct |
476 |
Q |
| |
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|||||||||||||||||||||| ||| ||||| |
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| T |
41979956 |
gctttctgtcttttctctcttcccagccgtagct |
41979923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 41980247 - 41980173
Alignment:
| Q |
252 |
tttgcttagtcaggtgaaacatctctcagccacacaagatcagtagccctgtgtgcatcaacgagtagattcagg |
326 |
Q |
| |
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||||||| |||||||| ||||||||| |||||| | |||||| |||||| |||| |||||||||||||||||| |
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| T |
41980247 |
tttgcttggtcaggtggaacatctctaagccactcgagatcaatagccccgtgtttttcaacgagtagattcagg |
41980173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 41980495 - 41980450
Alignment:
| Q |
204 |
cactccacacttttcattcccgatccccttatgctgagcatgaatt |
249 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||| ||||| |
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| T |
41980495 |
cactccacacttttcaatcccaatccccttatgctgagcaagaatt |
41980450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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