View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_15 (Length: 492)
Name: NF1371_low_15
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 37 - 464
Target Start/End: Complemental strand, 15161586 - 15161159
Alignment:
| Q |
37 |
actttaactagtttcagcagtgtttacatcatttttgttgagtttttcatgcttagtagtagtagttagcaaattgaattaatgaatagtgtgtggtgta |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15161586 |
actttaactagtttcagcagtgtttacatcatttttgtttagtttttcatgcttggtagtagtagttagcaaattgaattaatgaatagtgtgtggtgta |
15161487 |
T |
|
| Q |
137 |
cgtgccggtgctagtctaatttgccaatttggtcatttctatgacttttatcatcacaaatgctaataaatagtccagcacatgcttgtttctgtgaact |
236 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15161486 |
cgtgccggtgctagtctaatttgtcaatttggtcatttctatgacttttatcatcacaaatgctaataaatagtccagtacatgcttgtttctgtgaact |
15161387 |
T |
|
| Q |
237 |
gtgttctctgctaacaatagttctatctatttgattcagaaactataggttctcctttttgtattgatgtggaattcaagtggtattgattgtctttttg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15161386 |
gtgttctctgctaacaatagttctatctatttgattcagaaactataggttctcctttttgtattgatgtggaattcaagtggtattgattgtctttttg |
15161287 |
T |
|
| Q |
337 |
ctttttatagattttgttaactagtagtttgttactaatatgatatgttgactaggtgcagtttcaccgcatacatactggcgctgggaagattgttcct |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15161286 |
gtttttatagattttgttaactagtagtttgttactaatatgatatgttgactaggtgcagtttcaccgcatacatactggtgctgggaagattgttcct |
15161187 |
T |
|
| Q |
437 |
gaagtataggaggatggaattgtatggt |
464 |
Q |
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| T |
15161186 |
gaagtctaggaggatggaattgtatggt |
15161159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 65 - 269
Target Start/End: Original strand, 18812380 - 18812589
Alignment:
| Q |
65 |
tcatttttgttgagtttttcatgcttagta--gtagtagttagcaaattgaattaatgaatagtgtgtggtgtacgtgccggtgctagtctaatttgcca |
162 |
Q |
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||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||| |
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| T |
18812380 |
tcatttttgttcagttttttatgcttagtatagtagtagttagcaaattgaattaatgaatagtatgtgttgtagatgccggtgctagtctaattttcca |
18812479 |
T |
|
| Q |
163 |
atttgg----tcatttctatgacttttatcatcacaaatgctaataaatagtccagcacatgcttgtttctgtgaactgtgttctctgctaacaatagtt |
258 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
18812480 |
atttggtcattcatttctatgacttttatcatcacaaatgctaataaaatgtcaagcacatgcttgtttctatgaac-gtgttctctgctaacaatagtt |
18812578 |
T |
|
| Q |
259 |
ctatctatttg |
269 |
Q |
| |
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|| |||||||| |
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| T |
18812579 |
ctctctatttg |
18812589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 37727729 - 37727630
Alignment:
| Q |
221 |
cttgtttctgtgaactgtgttctctgctaacaatagttctatctatttgattca---gaaactataggttctcctttttgtattgatgtggaattcaagt |
317 |
Q |
| |
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|||||||| ||||||||||| || ||||||||||||| ||| |||| |||||| |||||||| || | ||||||||||||||| ||||||||||||| |
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| T |
37727729 |
cttgtttccttgaactgtgttatcagctaacaatagttatatgtattcgattcatcagaaactatgggctttcctttttgtattgacgtggaattcaagt |
37727630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 29491302 - 29491463
Alignment:
| Q |
59 |
tttacatcatttttgttgagtttttcatgcttagtagtagtagttagcaaattgaattaatgaatagtgtgtggtgtacgtgccggtgctagtctaattt |
158 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||| |
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| T |
29491302 |
tttacatcatttttgttgagtttttcatgc---gtagtagtagttagcaaattgaaacaatgaacagtgtgtggtgt------gggtgctagtcaaattt |
29491392 |
T |
|
| Q |
159 |
gccaatttggtcatttctatgacttttatcatcacaaatgctaataaatagtccagcacatgcttgtttct |
229 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| |||| ||| |||| |||||||||| |||||| |
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| T |
29491393 |
gccaatttggtcatttctatgacttttatttccacaaatactaacaaaaagtctagcacatgctcgtttct |
29491463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 462
Target Start/End: Complemental strand, 40250209 - 40250142
Alignment:
| Q |
393 |
tgcagtttcaccgcatacatactggcgctgggaagattgttcctgaagtataggaggatggaattgtatg |
462 |
Q |
| |
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|||||||||||| ||||| ||||| ||||||||||||||||||||||| | || |||||||| |||||| |
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| T |
40250209 |
tgcagtttcacc--atacacactggtgctgggaagattgttcctgaagtcttgggggatggaaatgtatg |
40250142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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