View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_20 (Length: 477)
Name: NF1371_low_20
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 34376273 - 34375863
Alignment:
| Q |
11 |
acaatatcatgtttccatatgtgaatcaattttggcaactgctgcaatgtcaaattttttaattgataatgtgtgttgacatccccttttcttgtacctt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34376273 |
acaatatcatgtttccatatgtgaatcaattttggcaactgctgcaatgtcaaattttttaattgataatgtgtgttgacatccccttttcttgtacctt |
34376174 |
T |
|
| Q |
111 |
ttcctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtattttattgtaaggaacaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34376173 |
ttcctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtattttattgtaaggaacaag |
34376074 |
T |
|
| Q |
211 |
atatggcagttcatgacattctttgatacttatttttgagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34376073 |
atatggcagttcatgacattctttgatacttatttttgagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgt |
34375974 |
T |
|
| Q |
311 |
gatgccacctgtgaaacatgcatttatgtatttctcaattacgaaagtaactagtgaattaataacctaaaatgctacaattatgaattgatgaagcata |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34375973 |
gatgccacctgtgaaacatgcatttatgtatttctcaattacgaaagtaactagtgaattaataatctaaaatgctacaattatgaattgatgaagcata |
34375874 |
T |
|
| Q |
411 |
tatattagatc |
421 |
Q |
| |
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||||||||||| |
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| T |
34375873 |
tatattagatc |
34375863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 34288574 - 34288685
Alignment:
| Q |
218 |
agttcatgacattctttgatacttattttt-gagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgtgatgcc |
316 |
Q |
| |
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|||| |||| ||||||||||| |||||||| ||||||| || |||||||| || ||||| ||||||| ||||||||| | |||||||||||||| |
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| T |
34288574 |
agtttatgaaattctttgatatttattttttgagttttctatgaagtatccctcgttatgttgtttggtccaattcaacatctccaatccttgtgatgcc |
34288673 |
T |
|
| Q |
317 |
acctgtgaaaca |
328 |
Q |
| |
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|||||| ||||| |
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| T |
34288674 |
acctgtaaaaca |
34288685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 34562939 - 34563017
Alignment:
| Q |
114 |
ctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtat |
192 |
Q |
| |
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||||| ||||| ||| ||||||||| | ||||||||| | || |||| |||||||| |||||||||||| |||||||| |
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| T |
34562939 |
ctcctactgatccaaacacctcaaccaatgaatcacagtcacttgcattgagttccctcacatgttgaagtatttgtat |
34563017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 15892049 - 15892147
Alignment:
| Q |
112 |
tcctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtattttattgtaaggaacaag |
210 |
Q |
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||||||||||||| ||| ||||||| |||||||||||||| || | | || ||||||| ||||| ||||||||||||||| | |||||| || ||||| |
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| T |
15892049 |
tcctcctcctgatccaaacacctcatttagtgaatcacaattacttacggtcagttccttcacattttgaagcatttgtatctcattgtacggcacaag |
15892147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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