View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_low_24 (Length: 466)

Name: NF1371_low_24
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_low_24
NF1371_low_24
[»] chr7 (12 HSPs)
chr7 (58-438)||(1117020-1117399)
chr7 (71-163)||(47572015-47572107)
chr7 (67-215)||(39980281-39980433)
chr7 (104-230)||(41220280-41220410)
chr7 (175-236)||(47456593-47456654)
chr7 (67-141)||(7373677-7373751)
chr7 (83-155)||(19889081-19889153)
chr7 (171-236)||(25331864-25331929)
chr7 (175-240)||(27386896-27386961)
chr7 (78-155)||(30588486-30588563)
chr7 (175-236)||(47270968-47271029)
chr7 (186-234)||(46823368-46823416)
[»] chr2 (10 HSPs)
chr2 (67-239)||(38260433-38260609)
chr2 (83-239)||(45446563-45446721)
chr2 (84-153)||(36758910-36758979)
chr2 (83-138)||(373228-373283)
chr2 (83-146)||(41073005-41073068)
chr2 (83-155)||(374949-375021)
chr2 (83-155)||(8988812-8988883)
chr2 (83-139)||(30824124-30824180)
chr2 (86-138)||(38445562-38445613)
chr2 (175-215)||(43341547-43341587)
[»] chr5 (10 HSPs)
chr5 (78-163)||(4161225-4161310)
chr5 (70-141)||(32316711-32316782)
chr5 (121-204)||(30872848-30872935)
chr5 (178-239)||(4592455-4592516)
chr5 (175-239)||(4348006-4348070)
chr5 (79-148)||(35650270-35650339)
chr5 (178-239)||(43405688-43405749)
chr5 (175-235)||(14733606-14733666)
chr5 (186-234)||(35623503-35623551)
chr5 (175-235)||(43222178-43222238)
[»] chr1 (4 HSPs)
chr1 (70-225)||(37335733-37335892)
chr1 (69-141)||(3885672-3885745)
chr1 (178-239)||(39426032-39426093)
chr1 (87-138)||(6882840-6882891)
[»] chr6 (3 HSPs)
chr6 (68-141)||(2739418-2739491)
chr6 (119-214)||(2977922-2978018)
chr6 (83-153)||(2142342-2142412)
[»] chr8 (2 HSPs)
chr8 (71-141)||(34746434-34746504)
chr8 (83-155)||(24241531-24241603)
[»] chr4 (6 HSPs)
chr4 (78-234)||(52030661-52030818)
chr4 (177-234)||(26332939-26332996)
chr4 (102-140)||(4407416-4407454)
chr4 (83-141)||(47834537-47834595)
chr4 (83-155)||(4404246-4404318)
chr4 (83-155)||(37002298-37002370)
[»] chr3 (3 HSPs)
chr3 (175-234)||(41726928-41726987)
chr3 (178-235)||(43624339-43624396)
chr3 (83-155)||(31523715-31523787)
[»] scaffold0024 (1 HSPs)
scaffold0024 (118-215)||(45553-45654)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 58 - 438
Target Start/End: Complemental strand, 1117399 - 1117020
Alignment:
Q  58 atcataggcctccattttggatctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccacttgt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  1117399 atcataggcctccattttggatctcctccatttcttccatttacaaagataaaatcacaataaa-tttaaaaataattaatgatagtggaacccacttgt 1117301  T
Q  158 tggtaggacaatgtatattttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatcttaacctaactcaaatgatagtt 257  Q
    || |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  1117300 tgataggacaatgtatattttgtgtgtatctctttctaaatggcaatctctatttattcttaaaaatggagaggatcctaaactaactcaagtgatagtt 1117201  T
Q  258 ataaagggggagagtgaatgcgaaaaattttgcaataaatttttcagttatatttagagtaatgttaaggaataaatccaattatgatggtaaaaattac 357  Q
    |||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1117200 ataaagggggagagtgaatgtgaaaaattttgcactaaatttttcggttatatgtagagtaatgttaaggaataaatccaattatgatggtaaaaattac 1117101  T
Q  358 ctgtgagttttcgcaaaatcgaaaaatcatgggatagctagaattgtaacctattagaacttggatatcattgatctacct 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1117100 ctgtgagttttcgcaaaatcgaaaaatcatgggatagctagaattgtaacctattagaacttagatatcattgatctacct 1117020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 47572015 - 47572107
Alignment:
Q  71 attttggatctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccacttgttggtag 163  Q
    |||||||||||| ||||||| ||||||||  | | |||||| |||||||||||||  ||||||||||||||| || |||||||||||||||||    
T  47572015 attttggatctcatccatttattccatttgaagatataaagacacaataaaatttgtaaataattaatgataatggaacccacttgttggtag 47572107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 215
Target Start/End: Complemental strand, 39980433 - 39980281
Alignment:
Q  67 ctccattttggatctcctccatttcttccatttacaaagataaagtca-caataaaatttaaaaataattaatgatagtgaaacccacttgttggtagg- 164  Q
    ||||||||| |||||||| ||||||||||||||  | ||| |  | || |||||||||||||||||||||||||||  ||| || ||||| || |||||     
T  39980433 ctccattttagatctccttcatttcttccatttgaagagacatggacaacaataaaatttaaaaataattaatgatgatgagactcacttattcgtagga 39980334  T
Q  165 --acaatgtatattttgtgtgtatctctttttaaatgacaatctctatttatt 215  Q
      ||||| ||||||||||||||||||  || ||| |||||||||| |||||||    
T  39980333 ctacaatttatattttgtgtgtatctaattctaattgacaatctccatttatt 39980281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 41220280 - 41220410
Alignment:
Q  104 agataaagtcacaataaaatttaaaaataattaatgatagtgaaacccacttgttggtagg----acaatgtatattttgtgtgtatctctttttaaatg 199  Q
    |||||||| |||||||||||||||||||||| |||||| |||  ||||||| || ||||||    || || |||||||| |||| |||| ||||||||||    
T  41220280 agataaagacacaataaaatttaaaaataatcaatgatggtgggacccactagtcggtaggacccacgatttatattttttgtggatctttttttaaatg 41220379  T
Q  200 acaatctctatttattcttaaaaatggagag 230  Q
     |||||||  |||||| ||| ||||||||||    
T  41220380 gcaatctcgttttatttttataaatggagag 41220410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 47456654 - 47456593
Alignment:
Q  175 ttttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatctt 236  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||  ||||||||| ||||||    
T  47456654 ttttgtgtgtatctctttttaaatgacattctccatttatttttgtaaatggagatgatctt 47456593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 7373677 - 7373751
Alignment:
Q  67 ctccattttggatctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgat 141  Q
    ||||||||| |||||| |||||||||| | |||| | |||||||  ||||||||||||  |||||||||||||||    
T  7373677 ctccattttagatctcttccatttctttcttttagagagataaaagcacaataaaattagaaaataattaatgat 7373751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 19889153 - 19889081
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccactt 155  Q
    |||||||| ||||||||| | |||||||| ||||  |||| | |||||||||||||||| ||| |||||||||    
T  19889153 ctccatttattccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtggaacccactt 19889081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 25331864 - 25331929
Alignment:
Q  171 tatattttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatctt 236  Q
    |||||||||||||||||||||| |||||||||   || ||| ||| ||| |||| |||||||||||    
T  25331864 tatattttgtgtgtatctctttataaatgacatcttccattaatttttataaatagagaggatctt 25331929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 27386961 - 27386896
Alignment:
Q  175 ttttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatcttaacc 240  Q
    |||||||| |||||||||   ||| |||||||| ||||||| ||| ||||||||||||||| ||||    
T  27386961 ttttgtgtctatctctttcataataacaatctccatttatttttataaatggagaggatctcaacc 27386896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 30588486 - 30588563
Alignment:
Q  78 atctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccactt 155  Q
    |||| |||||||| ||||||||| | |||||||| ||||  |||| | |||||||||||||||| |||  ||||||||    
T  30588486 atcttctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccactt 30588563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 47271029 - 47270968
Alignment:
Q  175 ttttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatctt 236  Q
    |||||| ||||||||| | ||||||||| |||  ||||||| ||| ||||||||||||||||    
T  47271029 ttttgtatgtatctctatctaaatgacattcttcatttatttttataaatggagaggatctt 47270968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 46823416 - 46823368
Alignment:
Q  186 tctctttttaaatgacaatctctatttattcttaaaaatggagaggatc 234  Q
    ||||||| |||||| ||||||||||||||| ||| ||||| ||||||||    
T  46823416 tctctttctaaatgtcaatctctatttatttttataaatgtagaggatc 46823368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 38260433 - 38260609
Alignment:
Q  67 ctccattttggatctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccacttgttggtagg-- 164  Q
    |||||||||||||||||||||||||||||||||  |||||||||   |||||||||||||||||||||||||||  ||| |||| | ||||  |||||      
T  38260433 ctccattttggatctcctccatttcttccatttgaaaagataaaaatacaataaaatttaaaaataattaatgacggtggaaccaaattgtaagtagggc 38260532  T
Q  165 --acaatgtatattttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatcttaac 239  Q
      ||||| |||||||||||||||||| ||| ||||||||||| || ||| ||| ||| |||||||||||||| ||||    
T  38260533 ccacaatctatattttgtgtgtatctatttctaaatgacaatttcaattcatttttataaatggagaggatcctaac 38260609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 45446721 - 45446563
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccacttgttggtaggac--aatgtatattttgt 180  Q
    ||||||| || ||||||  | |||||||| ||||||||||||| ||| ||||||||||  |||  |||||||||||||||||||  |   | ||| ||||    
T  45446721 ctccattcctaccatttggagagataaagacacaataaaatttgaaactaattaatgacggtgggacccacttgttggtaggacccacgatctatattgt 45446622  T
Q  181 gtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatcttaac 239  Q
    |||||||||||| |||||| ||||||| ||||||| ||| |||||||||||||| ||||    
T  45446621 gtgtatctctttctaaatggcaatctccatttatttttataaatggagaggatcctaac 45446563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 36758979 - 36758910
Alignment:
Q  84 tccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccac 153  Q
    ||||||| ||||||||| |||||||||| ||||  |||| | |||||||||||||||| ||| |||||||    
T  36758979 tccatttgttccatttagaaagataaagacacacaaaaagtaaaaaataattaatgattgtggaacccac 36758910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 373283 - 373228
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaat 138  Q
    |||||||||||||||||| ||||||||||  |||| |||  |||||||||||||||    
T  373283 ctccatttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaat 373228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 41073068 - 41073005
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtga 146  Q
    ||||||||||| |||||| | |||||||| ||||| |||  |||||||||||||||||| ||||    
T  41073068 ctccatttctttcatttagagagataaagacacaaaaaatcttaaaaataattaatgattgtga 41073005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 374949 - 375021
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccactt 155  Q
    |||||||| ||||||||| | |||||||| ||||  |||| | |||||||||||||||| |||  ||||||||    
T  374949 ctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccactt 375021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 8988812 - 8988883
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccactt 155  Q
    |||||||| ||||||||| | |||||||| |||| ||||| | |||||||||||||||| |||  ||||||||    
T  8988812 ctccatttgttccatttagagagataaagacaca-taaaaataaaaaataattaatgatggtgggacccactt 8988883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 30824124 - 30824180
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatg 139  Q
    |||||||||||||||||| | ||||| || ||||| |||  ||||||||||||||||    
T  30824124 ctccatttcttccatttagagagatatagacacaaaaaatcttaaaaataattaatg 30824180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 38445613 - 38445562
Alignment:
Q  86 catttcttccatttacaaagataaagtcacaataaaatttaaaaataattaat 138  Q
    ||||||||||||||  |||||||||||||||| ||| ||| ||||||||||||    
T  38445613 catttcttccatttggaaagataaagtcacaa-aaagtttgaaaataattaat 38445562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 43341587 - 43341547
Alignment:
Q  175 ttttgtgtgtatctctttttaaatgacaatctctatttatt 215  Q
    |||||||||| ||||||||||||||||||| || |||||||    
T  43341587 ttttgtgtgtctctctttttaaatgacaatttccatttatt 43341547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 4161310 - 4161225
Alignment:
Q  78 atctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccacttgttggtag 163  Q
    |||| |||||||||||| ||||| | |||||||| |||||||||||||||||||||||||  |  ||||||| |||||||||||||    
T  4161310 atcttctccatttcttctatttaaagagataaagacacaataaaatttaaaaataattaacaacggtgaaactcacttgttggtag 4161225  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 32316782 - 32316711
Alignment:
Q  70 cattttggatctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgat 141  Q
    |||||||||||| ||| ||||||||| |||| | |||||||  ||||||||||||| |||| ||||||||||    
T  32316782 cattttggatcttctcaatttcttccgtttagagagataaatacacaataaaatttgaaaacaattaatgat 32316711  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 30872935 - 30872848
Alignment:
Q  121 aatttaaaaataattaatgatagtgaaacccacttgttggtagga----caatgtatattttgtgtgtatctctttttaaatgacaat 204  Q
    ||||||||| ||| |||||||  || |||||||||||||||||||    | ||||||||||| ||| ||||||||| |||||||||||    
T  30872935 aatttaaaattaagtaatgatgatggaacccacttgttggtaggatttacgatgtatattttatgtatatctctttctaaatgacaat 30872848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 4592516 - 4592455
Alignment:
Q  178 tgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatcttaac 239  Q
    ||||||||||| |||||||||| || |||| ||||||| ||| ||||| |||||||||||||    
T  4592516 tgtgtgtatctatttttaaatggcattctccatttatttttataaatgaagaggatcttaac 4592455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 4348070 - 4348006
Alignment:
Q  175 ttttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatcttaac 239  Q
    |||| ||||||||||||| |||||| || |||| ||||||| ||| | |||||||||||||||||    
T  4348070 ttttatgtgtatctctttctaaatggcattctccatttatttttatatatggagaggatcttaac 4348006  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 35650270 - 35650339
Alignment:
Q  79 tctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaa 148  Q
    ||||||||||||||| |||||  | ||||| |  || || ||||||||||||||||||||||| ||||||    
T  35650270 tctcctccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaa 35650339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 43405688 - 43405749
Alignment:
Q  178 tgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatcttaac 239  Q
    ||||||||||||||| ||||||| | |||| ||||||| |||   |||||||||||||||||    
T  43405688 tgtgtgtatctctttctaaatgatattctccatttatttttattgatggagaggatcttaac 43405749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 14733606 - 14733666
Alignment:
Q  175 ttttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatct 235  Q
    |||||||| |||||||||   |||||||||||  ||||||| ||| |||||||||||||||    
T  14733606 ttttgtgtctatctctttcctaatgacaatcttcatttatttttataaatggagaggatct 14733666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 35623503 - 35623551
Alignment:
Q  186 tctctttttaaatgacaatctctatttattcttaaaaatggagaggatc 234  Q
    ||||||| ||||||||| |||| ||||||| ||| ||||||||||||||    
T  35623503 tctctttctaaatgacattctccatttatttttataaatggagaggatc 35623551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 43222178 - 43222238
Alignment:
Q  175 ttttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatct 235  Q
    |||||||| |||||||||   |||||||||||| ||||||| ||| |||||||||| ||||    
T  43222178 ttttgtgtctatctctttcataatgacaatctccatttatttttataaatggagagtatct 43222238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 225
Target Start/End: Complemental strand, 37335892 - 37335733
Alignment:
Q  70 cattttggatctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccacttgttggtaggac--- 166  Q
    |||||| ||||| ||| |||| ||||||||  |||||||||| || |||||||||| |||||||||||| |  ||   ||  |||| ||| ||  ||       
T  37335892 cattttagatcttctctatttattccattttaaaagataaagacaaaataaaatttgaaaataattaataaaggtatgacatacttattgatataactta 37335793  T
Q  167 -aatgtatattttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatg 225  Q
     ||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  37335792 taatctatattttgtatgtatctctttttaaatgacaatctctatttatttttataaatg 37335733  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 3885672 - 3885745
Alignment:
Q  69 ccattttggatctcctccatttcttccattt-acaaagataaagtcacaataaaatttaaaaataattaatgat 141  Q
    |||||||| ||||| |||||||||||||||| | |||||||| | |||||| ||||||||||||||||||||||    
T  3885672 ccattttgtatctcttccatttcttccatttgaaaaagataaggacacaattaaatttaaaaataattaatgat 3885745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 39426032 - 39426093
Alignment:
Q  178 tgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatcttaac 239  Q
    |||||| |||| ||| ||||||||| |||||||||||| ||| ||||||||| |||||||||    
T  39426032 tgtgtgcatctttttctaaatgacattctctatttatttttataaatggagaagatcttaac 39426093  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 6882891 - 6882840
Alignment:
Q  87 atttcttccatttacaaagataaagtcacaataaaatttaaaaataattaat 138  Q
    |||| |||||||| || |||||||| ||||| ||||||||||||||||||||    
T  6882891 attttttccatttgcagagataaagacacaaaaaaatttaaaaataattaat 6882840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 2739418 - 2739491
Alignment:
Q  68 tccattttggatctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgat 141  Q
    ||||||||||||| |||||||||| || ||||| |||||||||   |||||| |||||||||||||||||||||    
T  2739418 tccattttggatcacctccatttcctcaatttaaaaagataaaaatacaatataatttaaaaataattaatgat 2739491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 2977922 - 2978018
Alignment:
Q  119 aaaatttaaaaataattaatgatagtgaaacccacttgttggtagg----acaatgtatattttgtgtgtatctctttttaaatgacaatctctatttat 214  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||    ||||| ||   ||||||||||||| ||| |||||||||||||| ||||||    
T  2977922 aaaatttaaaaataattaatgataatgaaactcacttgtttgtaggacttacaatcta---tttgtgtgtatctatttgtaaatgacaatctccatttat 2978018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 2142412 - 2142342
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccac 153  Q
    ||||||||| |||||||| | |||||||| ||||  |||| | |||||||||||||||| ||| |||||||    
T  2142412 ctccatttcctccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtggaacccac 2142342  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 34746504 - 34746434
Alignment:
Q  71 attttggatctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgat 141  Q
    |||||| ||||||| ||||||||||||||  | ||||| || ||||||||||||||||||| |||||||||    
T  34746504 attttgaatctccttcatttcttccatttgaagagatatagacacaataaaatttaaaaatgattaatgat 34746434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 24241531 - 24241603
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccactt 155  Q
    ||||||||| |||||||| | |||||||| ||||  |||| | |||||||||||||||| |||||||||||||    
T  24241531 ctccatttcctccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgaaacccactt 24241603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 234
Target Start/End: Complemental strand, 52030818 - 52030661
Alignment:
Q  78 atctcctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccacttgttggtagg----acaatgtat 173  Q
    ||||| |||| ||||| |||||  | ||||| || || |||||||||||||||||||||||||| |||  |||||||| || |||||    |||||  ||    
T  52030818 atctcttccaattctttcatttggagagatatagacaaaataaaatttaaaaataattaatgatggtgggacccacttatttgtaggatccacaattcat 52030719  T
Q  174 attttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatc 234  Q
    |||||||||||||   |||  ||||||||| ||| |||||||  || ||||||||||||||    
T  52030718 attttgtgtgtat---tttcgaaatgacaaactccatttattggtataaatggagaggatc 52030661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 26332996 - 26332939
Alignment:
Q  177 ttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatc 234  Q
    |||||| ||||||||| ||||||||| |||| ||||||| ||| ||||||||||||||    
T  26332996 ttgtgtatatctctttctaaatgacattctccatttatttttataaatggagaggatc 26332939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 4407416 - 4407454
Alignment:
Q  102 aaagataaagtcacaataaaatttaaaaataattaatga 140  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  4407416 aaagataaagtcacaataaaacttgaaaataattaatga 4407454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 47834537 - 47834595
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgat 141  Q
    ||||||||| |||||||| |||||||||| ||||  |||| | ||||||||||||||||    
T  47834537 ctccatttcctccatttagaaagataaagacacataaaaagtaaaaaataattaatgat 47834595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 4404246 - 4404318
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccactt 155  Q
    ||||||||| |||||||| |||||||||| ||||  |||| | |||| ||||||||||| |||| || |||||    
T  4404246 ctccatttcctccatttagaaagataaagacacataaaaagtaaaaattaattaatgatggtgagacacactt 4404318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 37002370 - 37002298
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccactt 155  Q
    |||||||| ||||||||| | |||||||| ||||  |||| | |||||||||||||||| |||  ||||||||    
T  37002370 ctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccactt 37002298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 41726987 - 41726928
Alignment:
Q  175 ttttgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatc 234  Q
    |||||||||||||| ||||||||||||| |||  ||||||| ||| || |||||||||||    
T  41726987 ttttgtgtgtatctttttttaaatgacactcttcatttatttttataactggagaggatc 41726928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 43624396 - 43624339
Alignment:
Q  178 tgtgtgtatctctttttaaatgacaatctctatttattcttaaaaatggagaggatct 235  Q
    ||||| ||||||||||  |||||||||||| ||||||| ||| |||| ||||||||||    
T  43624396 tgtgtctatctcttttataatgacaatctccatttatttttataaatagagaggatct 43624339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 31523787 - 31523715
Alignment:
Q  83 ctccatttcttccatttacaaagataaagtcacaataaaatttaaaaataattaatgatagtgaaacccactt 155  Q
    |||||||| ||||||||| | |||||||| ||||  |||| | |||||||||||||||| |||  ||||||||    
T  31523787 ctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccactt 31523715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 45654 - 45553
Alignment:
Q  118 taaaatttaaaaataattaatgatagtgaaacccacttgttggtagg----acaatgtatattttgtgtgtatctctttttaaatgacaatctctattta 213  Q
    |||||||| ||||||||||||||| ||  ||||||||| || |||||    ||||| |||||||  | ||| |||||||||||||| ||||||  |||||    
T  45654 taaaatttgaaaataattaatgatggtagaacccacttattagtaggactcacaatctatatttcatttgtgtctctttttaaatggcaatctgaattta 45555  T
Q  214 tt 215  Q
    ||    
T  45554 tt 45553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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