View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_27 (Length: 446)
Name: NF1371_low_27
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 99 - 442
Target Start/End: Original strand, 47301484 - 47301827
Alignment:
| Q |
99 |
gttaattaaccacggtgatttcaacagagttttcattggtggtgatagtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagct |
198 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47301484 |
gttaattaaccacggtgatttcaacagagttttcattggtggtgatagtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagct |
47301583 |
T |
|
| Q |
199 |
ttacctaatggtgttaaactattaggagctattttacaacagccttatttctatagttcataccctgttggattagaaagtgttaaacttaagagttctg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47301584 |
ttacctaatggtgttaaactattaggagctattttacaacagccttatttctatagttcataccctgttggattagaaagtgttaaacttaagagttctg |
47301683 |
T |
|
| Q |
299 |
ataaagatttgcactattctgtttggaattttgtgtatccttcagcacccggtgggattgataatcctatgattaatcctgtgggtataggggcacctag |
398 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47301684 |
ataaagatttccactattctgtttggaattttgtgtatccttcagcacccggtgggattgataatcctatgattaatcctgtgggtataggggcacctag |
47301783 |
T |
|
| Q |
399 |
tttggatggacttggttgtgacaggattattatctgtggtgctg |
442 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
47301784 |
tttggatggacttggttgtgacaggattattatttgtgttgctg |
47301827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 99 - 442
Target Start/End: Original strand, 47304382 - 47304713
Alignment:
| Q |
99 |
gttaattaaccacggtgatttcaacagagttttcattggtggtgatagtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagct |
198 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47304382 |
gttaattaaccatggtgatttcaacagagttttcattggtggtgctagtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagct |
47304481 |
T |
|
| Q |
199 |
ttacctaatggtgttaaactattaggagctattttacaacagccttatttctatagttcataccctgttggattagaaagtgttaaacttaagagttctg |
298 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| ||||||||| |
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| T |
47304482 |
ttacccaatgatgttaaattattaggagctattttacaacaccctttattctatagttcataccctgttggattggaaaatgttaaact----------- |
47304570 |
T |
|
| Q |
299 |
ataaagatttgcactattctgtttggaattttgtgtatccttcagcacccggtgggattgataatcctatgattaatcctgtgggtataggggcacctag |
398 |
Q |
| |
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||||||||| ||| || ||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
47304571 |
-taaagatttctactcttacctttggaattttgtgtatccatcagcacctggtggaattgataatcctatggttaatcctgtgggcataggggcacctag |
47304669 |
T |
|
| Q |
399 |
tttggatggacttggttgtgacaggattattatctgtggtgctg |
442 |
Q |
| |
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||||||||||||||||||||| ||||| ||| | |||| ||||| |
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|
| T |
47304670 |
tttggatggacttggttgtgataggatgattgtttgtgttgctg |
47304713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 47333263 - 47333319
Alignment:
| Q |
322 |
tggaattttgtgtatccttcagcacccggtgggattgataatcctatgattaatcct |
378 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| ||| |||| |||||| |
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|
| T |
47333263 |
tggaattttgtgtatcctgatgcacctggtgggattgataaccctttgatcaatcct |
47333319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 99 - 442
Target Start/End: Original strand, 17841621 - 17841964
Alignment:
| Q |
99 |
gttaattaaccacggtgatttcaacagagttttcattggtggtgatagtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagct |
198 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17841621 |
gttaattaaccatggtgatttcaacagagttttcattggtggtcctagttctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagct |
17841720 |
T |
|
| Q |
199 |
ttacctaatggtgttaaactattaggagctattttacaacagccttatttctatagttcataccctgttggattagaaagtgttaaacttaagagttctg |
298 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
17841721 |
ttacctaatgatgttaaattagtaggagctattttacaacagcctttgttctttagttcataccctgttggattggaaagtgttaaatttaagagttctg |
17841820 |
T |
|
| Q |
299 |
ataaagatttgcactattctgtttggaattttgtgtatccttcagcacccggtgggattgataatcctatgattaatcctgtgggtataggggcacctag |
398 |
Q |
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|
||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17841821 |
ataaagatttgtactcttctgtttggaattttgtgtatccttcagcaccttgtgggattgataatcctatgattaatcctgtgggtataggggcacctag |
17841920 |
T |
|
| Q |
399 |
tttggatggacttggttgtgacaggattattatctgtggtgctg |
442 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| | |||| ||||| |
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|
| T |
17841921 |
tttggatggacttggttgtgataggatgattgtttgtgttgctg |
17841964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 663390 - 663475
Alignment:
| Q |
103 |
attaaccacggtgatttcaacagagttttcattggtggtgatagtgctggtggtaacatagttcataacatcgctatgcgtgctgg |
188 |
Q |
| |
|
||||| || ||||||||||||| |||||| |||||||||||||| ||||| || || ||||| ||||| |||||||||||||| |
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| T |
663390 |
attaatcatggtgatttcaacaaagtttttattggtggtgatagcagtggtgcaaatattgttcacaacattgctatgcgtgctgg |
663475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 673174 - 673216
Alignment:
| Q |
116 |
atttcaacagagttttcattggtggtgatagtgctggtggtaa |
158 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
673174 |
atttcaatagagttttcattggtggtgatagtagtggtggtaa |
673216 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 15234151 - 15234048
Alignment:
| Q |
128 |
ttttcattggtggtgatagtgctggtggtaacatagttcataacatcgctatgcgtgctggctctgaagctttacctaatggtgttaaactattaggagc |
227 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || | ||||||||| || || | ||||| |||| ||||||| || ||||||| |||||||||| |
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|
| T |
15234151 |
ttttcattggtggtgatagtgctggtgctaatattgctcataacattgcaattcaagctggacttgaaaatttaccttgtgatgttaaaatattaggagc |
15234052 |
T |
|
| Q |
228 |
tatt |
231 |
Q |
| |
|
|||| |
|
|
| T |
15234051 |
tatt |
15234048 |
T |
|
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