View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_low_3 (Length: 657)

Name: NF1371_low_3
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_low_3
NF1371_low_3
[»] chr8 (15 HSPs)
chr8 (160-628)||(16791184-16791654)
chr8 (14-161)||(16790986-16791136)
chr8 (387-620)||(16790002-16790240)
chr8 (16-158)||(16792900-16793045)
chr8 (472-628)||(16616827-16616983)
chr8 (472-628)||(16792466-16792621)
chr8 (4-103)||(16617254-16617353)
chr8 (429-620)||(16628535-16628732)
chr8 (429-620)||(16637416-16637613)
chr8 (472-615)||(16790567-16790709)
chr8 (4-157)||(16629578-16629734)
chr8 (4-157)||(16638459-16638615)
chr8 (14-55)||(15110408-15110449)
chr8 (4-103)||(16629270-16629369)
chr8 (4-103)||(16638151-16638250)
[»] chr4 (2 HSPs)
chr4 (11-126)||(38877738-38877856)
chr4 (539-618)||(38877367-38877446)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 160 - 628
Target Start/End: Original strand, 16791184 - 16791654
Alignment:
Q  160 gtctatggcaacttcatgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatcaacatgtcatct 259  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  16791184 gtctatggcaacttcttgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatca-catgtcattt 16791282  T
Q  260 tgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcatttgaactcattcattatgataggaaaatgccctcaagttgtggtaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  16791283 tgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcacttgaacacattcattatgataggaaaatgccctcaagttgtggtaa 16791382  T
Q  360 tctttggnnnnnnnnnncttctaccattgaaatctatgagtatgtcattattttctctcacttcttgcaagaatcttttagtggaaataaaaaacataaa 459  Q
    |||||||           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16791383 tctttggttttttttt--ttccaccattgaaatctatgagtatgtcattattttctctcacttcttgcaagaatcttttagtggaaataaaaaacataaa 16791480  T
Q  460 caatcgattctc-----tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaa 554  Q
    ||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||    
T  16791481 caatcgattctcgactatgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccatcgaacaaagtgaagggtcacgtattaaaa 16791580  T
Q  555 tcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgatttt 628  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  16791581 tcatgtacaatgcagtgactatcaatcagaaccatgtatctcacttcacttatgataaaaaggtaagtgatttt 16791654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 16790986 - 16791136
Alignment:
Q  14 aggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataat---tgtaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  16790986 aggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaatgtaa 16791085  T
Q  111 tttaaatactttagtggcaagacttcaccttcgagaacaataaaggtcagt 161  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16791086 tttaaatactttagtggcaagacttcaccttcaagaacaataaaggtcagt 16791136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 387 - 620
Target Start/End: Original strand, 16790002 - 16790240
Alignment:
Q  387 tgaaatctatgagtatgtcattattttctctcacttcttgcaagaatcttttagtggaaataaaaaa-cataaacaatcgatt------ctctgagatgg 479  Q
    ||||||||| ||||||||||||||||||||  |||||||||||||||| | |||||||||||||||| ||||||| |||||||      || ||||||||    
T  16790002 tgaaatctacgagtatgtcattattttctc--acttcttgcaagaatcatatagtggaaataaaaaaacataaacgatcgattgtttgactatgagatgg 16790099  T
Q  480 ttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtgactatcaa 579  Q
    |||| ||||||||||||||| ||||||||||  |||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||| |    
T  16790100 ttattgctgaaaaggaaaatgttgaaagtgcgctaggagtagcgaccgaacatagtgaaggatcaattgttaaaatcatgtacaatgcagtgactatcga 16790199  T
Q  580 tcggaaccacgtatctcacttcacttatgataaaaaggtaa 620  Q
    || |||||  |||||||||||||||||||||||||||||||    
T  16790200 tcagaaccttgtatctcacttcacttatgataaaaaggtaa 16790240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 16792900 - 16793045
Alignment:
Q  16 gtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata---attgtaatt 112  Q
    |||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||  |||||||||||||| |||||||||||   | |||||||    
T  16792900 gtggttgcaaaaaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatgtaatt 16792999  T
Q  113 taaatactttagtggcaagacttcaccttcgagaacaataaaggtc 158  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  16793000 taaatactttagtggcaagacttcgccttcgagaacaataaaggtc 16793045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 472 - 628
Target Start/End: Complemental strand, 16616983 - 16616827
Alignment:
Q  472 tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtg 571  Q
    |||| ||||||||||| ||||||||| | ||||||||| | | ||||||||  |||||||||||||||||| |||| | ||||| |||||||||||||||    
T  16616983 tgaggtggttatcgctaaaaaggaaattgttgaaagtgtagttggagtagctgccgaacaaagtgaaggattacttgtgaaaattatgtacaatgcagtg 16616884  T
Q  572 actatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgatttt 628  Q
     |||||||||  ||||  ||||||||||| |||| |||||||||||||| |||||||    
T  16616883 tctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgatttt 16616827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 472 - 628
Target Start/End: Complemental strand, 16792621 - 16792466
Alignment:
Q  472 tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtg 571  Q
    |||| ||||||||| ||||||||||||||| ||||||||  ||||||||||   |||||||| |||| ||| |||| ||||||||||||||| |||| ||    
T  16792621 tgaggtggttatcgttgaaaaggaaaatat-gaaagtgcgctaggagtagctttcgaacaaattgaatgattacttgttaaaatcatgtacattgcaatg 16792523  T
Q  572 actatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgatttt 628  Q
    ||||||||||  | ||| ||||||||||||| || ||||||||| |||| |||||||    
T  16792522 actatcaatcaaagccatgtatctcacttcatttctgataaaaatgtaaatgatttt 16792466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 16617254 - 16617353
Alignment:
Q  4 ggagtagcataggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata 103  Q
    |||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||  |||||||| |||||||| ||||||||    
T  16617254 ggagtatcaaaggtggttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaata 16617353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 16628732 - 16628535
Alignment:
Q  429 agaatcttttagtggaaataaaaaacataaacaatcgatt------ctctgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagc 522  Q
    ||||| ||||||  ||||||||| ||||||| ||||||||      || |||| ||||||||| ||||||||||||| |||||||   | ||||| ||||    
T  16628732 agaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatcggtgaaaaggaaaatgttgaaaggttagtaggattagc 16628633  T
Q  523 caccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaa 620  Q
      ||||||||  || ||||| |||| ||||||||||||||||||||||||| |||||||  ||||  ||||||||||||||||  |||||||||||||    
T  16628632 ttccgaacaagttggaggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaa 16628535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 16637613 - 16637416
Alignment:
Q  429 agaatcttttagtggaaataaaaaacataaacaatcgatt------ctctgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagc 522  Q
    ||||| ||||||  ||||||||| ||||||| ||||||||      || |||| ||||||||| ||||||||||||| |||||||   | ||||| ||||    
T  16637613 agaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatcggtgaaaaggaaaatgttgaaaggttagtaggattagc 16637514  T
Q  523 caccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaa 620  Q
      ||||||||  || ||||| |||| ||||||||||||||||||||||||| |||||||  ||||  ||||||||||||||||  |||||||||||||    
T  16637513 ttccgaacaagttggaggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaa 16637416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 472 - 615
Target Start/End: Complemental strand, 16790709 - 16790567
Alignment:
Q  472 tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtg 571  Q
    |||| ||||||||| ||||| ||||||||| ||||||||  ||||||||||   |||||||| |||| ||| |||| |||||||||||||||||||| ||    
T  16790709 tgaggtggttatcgttgaaagggaaaatat-gaaagtgcgctaggagtagctttcgaacaaattgaatgattacttgttaaaatcatgtacaatgcaatg 16790611  T
Q  572 actatcaatcggaaccacgtatctcacttcacttatgataaaaa 615  Q
    ||||||||||  | ||| |||||||| ||||||| |||||||||    
T  16790610 actatcaatcaaagccatgtatctcatttcacttctgataaaaa 16790567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 16629578 - 16629734
Alignment:
Q  4 ggagtagcataggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat- 102  Q
    |||||| || ||||||||| | |||||  | || |||||||| ||||||||| ||||||| |||||||||||  |||| ||| ||||||||||||||||     
T  16629578 ggagtatcaaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaata 16629677  T
Q  103 --aattgtaatttaaatactttagtggcaagacttcaccttcgagaacaataaaggt 157  Q
      || | || || ||| ||||||||||| ||||| |||||||| ||  |||||||||    
T  16629678 tcaaatttagttcaaacactttagtggcgagactccaccttcgggactaataaaggt 16629734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 16638459 - 16638615
Alignment:
Q  4 ggagtagcataggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat- 102  Q
    |||||| || ||||||||| | |||||  | || |||||||| ||||||||| ||||||| |||||||||||  |||| ||| ||||||||||||||||     
T  16638459 ggagtatcaaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaata 16638558  T
Q  103 --aattgtaatttaaatactttagtggcaagacttcaccttcgagaacaataaaggt 157  Q
      || | || || ||| ||||||||||| ||||| |||||||| ||  |||||||||    
T  16638559 tcaaatttagttcaaacactttagtggcgagactccaccttcgggactaataaaggt 16638615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 15110449 - 15110408
Alignment:
Q  14 aggtggttgcaacaaagctgcgaggcattttctatcctgtgg 55  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  15110449 aggtggttgcaacaaagctgcgatgcattttccatcctgtgg 15110408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 16629270 - 16629369
Alignment:
Q  4 ggagtagcataggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata 103  Q
    |||||| || ||| ||||| | |||||  |||| |||| ||| ||||||||| ||||||| |||||||||||  |||||||  | |||||||||||||||    
T  16629270 ggagtaccaaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata 16629369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 16638151 - 16638250
Alignment:
Q  4 ggagtagcataggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata 103  Q
    |||||| || ||| ||||| | |||||  |||| |||| ||| ||||||||| ||||||| |||||||||||  |||||||  | |||||||||||||||    
T  16638151 ggagtaccaaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata 16638250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 38877738 - 38877856
Alignment:
Q  11 cataggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattg 107  Q
    ||||||||||||||||||||||| ||||||||||| || |||||| |  |||| ||| |||||||  |||||||| ||||| ||||||||||   || ||    
T  38877738 cataggtggttgcaacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatg 38877837  T
Q  108 taatttaaatactttagtg 126  Q
    ||| ||||| |||||||||    
T  38877838 taaattaaacactttagtg 38877856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 539 - 618
Target Start/End: Complemental strand, 38877446 - 38877367
Alignment:
Q  539 ggatcacttattaaaatcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggt 618  Q
    |||| |||| |||||||||||||||||||||||||||| |||| | |||  ||||||||||| || ||||||||||||||    
T  38877446 ggattacttcttaaaatcatgtacaatgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggt 38877367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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