View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_30 (Length: 439)
Name: NF1371_low_30
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 53741010 - 53740855
Alignment:
| Q |
11 |
cagagaaatgaattggtttgcgggcattgcctgaaagaaattttattccattcttatatatactgtgatcgagtgggctctattcaatccaatgtgcttc |
110 |
Q |
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| T |
53741010 |
cagagaaatgaattggtttgccggcattgcctgaaagaaattttattccattcttatatatactgtgatcgagtgggctctattcaatccaatgtgcttc |
53740911 |
T |
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| Q |
111 |
taacatttttgccataaaactgtaccgatcagcagcttcgtcgatctgacaaatat |
166 |
Q |
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| T |
53740910 |
taacatttttgccataaaactgtaccgatcggcagcttcgtcgatctgacaaatat |
53740855 |
T |
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Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 338 - 410
Target Start/End: Complemental strand, 53740806 - 53740734
Alignment:
| Q |
338 |
caacctgaaaccataattgttaccattttctttgttggacgacccgctccatgtccagctttgcagtcgatgc |
410 |
Q |
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| T |
53740806 |
caacctgaaaccataattgttaccattttctttgttggacgacccgctccatgtccagctttgcagtcaatgc |
53740734 |
T |
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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 13854868 - 13854951
Alignment:
| Q |
187 |
gtgtcccgtatatatgcggcgccagttgtattgatcttttcctcctcgagtttttcgcatcttgcgattactcgcttttaataa |
270 |
Q |
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| T |
13854868 |
gtgttccgtatatttgtggcgtcgattgttttgatcttttcctcctcgagtttttcgcgtcttgcgattactcgcatttaataa |
13854951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 26042310 - 26042404
Alignment:
| Q |
187 |
gtgtcccgtatatatgcggcgccagttgtattgatcttttcctcctcgagtttttcgcatcttgcgattactcgcttttaataatatttgtcatt |
281 |
Q |
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| T |
26042310 |
gtgttccgtatatatgcggcgccggttgtattgctctttttcttctcgagtttttcgtaccttataattacttgttattaataatatttgccatt |
26042404 |
T |
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