View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1371_low_33 (Length: 429)
Name: NF1371_low_33
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 29 - 422
Target Start/End: Complemental strand, 47363 - 46970
Alignment:
| Q |
29 |
agataaaatctatatgcaaaaatcaactgcagagtgtgtaataggtgaatgtgaaaatacagaagcacaatgttcaactgtaccattggcttccaatttt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47363 |
agataaaatctatatgcaaaaatcaactgcagagtgtgtaataggtgaatgtgaaaatacagaagcacaatgttcaactgtaccattggcttccaatttt |
47264 |
T |
|
| Q |
129 |
gttttcaatcttccatatttgaagacacgtcttgatcagatagactcctcagaacaatacaaactcttatagtatcattctatttcaagaagagaccatc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47263 |
gttttcaatcttccatatttgaagacacgtcttgatcagatagactcctcagaacaatacaaactcttatagtatcattctatttcaagaagagaccatc |
47164 |
T |
|
| Q |
229 |
tcaattgaggtttcaatgagatttaatttgtaatcatactattacttagtaaactactcttcaaagtcacgatcaatattcatagttatctaatatctag |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47163 |
tcaattgaggtttcaatgagatttaatttgtaatcatactattacttagtaaactactcttcaaagtcacgatcaatattcatagttatctaatatctag |
47064 |
T |
|
| Q |
329 |
tgtattctatttgggaaccaagtgtggttcccaaagtaaacaaccaagtgtggttctgttcttcacaatcgcggatcttaagttatattgttgg |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
47063 |
tgtattctatttgggaaccaagtgtggttcccaaagtaaacaaccaagtgtggttctcttcttcacagtggcggatcttaagttattttgttgg |
46970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University