View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_36 (Length: 421)
Name: NF1371_low_36
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 27 - 393
Target Start/End: Complemental strand, 27047166 - 27046800
Alignment:
| Q |
27 |
aatatggatctttaataagtcgatgtccttgttaagtaacagatataaggtaaaatgttttgctactatattcatttactagtgattgccttatctaggt |
126 |
Q |
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|||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
27047166 |
aatatggatctttaataagtcgatgtccttattaaataaaagatgtaaggtaaaatgctttgctactatattcatttactagtgagtgccttatataggt |
27047067 |
T |
|
| Q |
127 |
caatagtacaaaatagttgtaatacaatacaatgcttagtaaaactaattcctaacatatcttcctttaaatcgagcaattatacgatcattttacatta |
226 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
27047066 |
caatagtacaaaatagttttaatacaatacaatgcttagtaaaactaattcctaacatatcttcccttaaatcgagcaattatacaatcattttacatta |
27046967 |
T |
|
| Q |
227 |
gacaagtcacaaatgcctaagttatctcttagtttgcaaaatgtttccaacttgaaaggtttagtcattatatcagctaactgatcttgtgtgctacaat |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27046966 |
gacaagtcacaaatgcctaagttatctcttagtttgcaaaatgtttccaacttgaaaggtttagtcattatatcagctaactgatcttgtgtgctacaat |
27046867 |
T |
|
| Q |
327 |
gttccaattgaactataccatctttggtgagatatctcaagtggtacctaacatcaatgtgcttgtt |
393 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27046866 |
gttccaattgaactataccatctttcgtgagatatctcaagtggtacctaacatcaacgtgcttgtt |
27046800 |
T |
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