View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_39 (Length: 413)
Name: NF1371_low_39
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 67 - 392
Target Start/End: Complemental strand, 27047525 - 27047190
Alignment:
| Q |
67 |
atattgtataatttggttatttaggtggtttttcaagagctattccgacattattatatctgatttggttattgtgtgtttggactctttagaagaaaag |
166 |
Q |
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| T |
27047525 |
atattgtataatttggctatttaggtggtgtttcaagagctattccgacattattatatctgatttgattattgtatatttggactctttgaaagaaaag |
27047426 |
T |
|
| Q |
167 |
aagcagatgtattttttcaacgaaatgaggaatcaatttattgagacttttaacaattttctttcccttaactcctttctttgtt-----------ctcc |
255 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
27047425 |
aagtagatgtattttttcaacgaaatgaggaatcaatttatcgagacttttaacaattttctttcccttaactcctttctttgctctcaagtctaactcc |
27047326 |
T |
|
| Q |
256 |
ctttgactataaactcttcaacaaagaacttaagatggtgggaccaactttatttacnnnnnnnnnctccctatttttatcgcgggacctgttatttgct |
355 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||| |
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| T |
27047325 |
ctttaactataaactctcaaacaaagaacttaagatggtgggactaactttatttac-ttttttttctccctaattttatcgcgggatctgttatttgct |
27047227 |
T |
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| Q |
356 |
gaagaaagagttcttatataattatcggtaacaaata |
392 |
Q |
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|||||||||||||||||||| || ||||||||||||| |
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| T |
27047226 |
gaagaaagagttcttatatagttgtcggtaacaaata |
27047190 |
T |
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