View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_low_4 (Length: 657)

Name: NF1371_low_4
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_low_4
NF1371_low_4
[»] chr8 (15 HSPs)
chr8 (160-628)||(16791184-16791654)
chr8 (10-161)||(16790982-16791136)
chr8 (387-620)||(16790002-16790240)
chr8 (11-158)||(16792895-16793045)
chr8 (472-628)||(16616827-16616983)
chr8 (11-103)||(16617261-16617353)
chr8 (472-628)||(16792466-16792621)
chr8 (429-620)||(16628535-16628732)
chr8 (429-620)||(16637416-16637613)
chr8 (472-615)||(16790567-16790709)
chr8 (11-157)||(16629585-16629734)
chr8 (11-157)||(16638466-16638615)
chr8 (12-55)||(15110408-15110451)
chr8 (11-103)||(16629277-16629369)
chr8 (11-103)||(16638158-16638250)
[»] chr4 (2 HSPs)
chr4 (539-618)||(38877367-38877446)
chr4 (14-126)||(38877741-38877856)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 160 - 628
Target Start/End: Original strand, 16791184 - 16791654
Alignment:
Q  160 gtctatggcaacttcatgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatcaacatgtcatct 259  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  16791184 gtctatggcaacttcttgtttttatgatgattttcctttcctttggtcccaactcatcgatccaagcaaaatgtcagaatgatcaatca-catgtcattt 16791282  T
Q  260 tgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcatttgaactcattcattatgataggaaaatgccctcaagttgtggtaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  16791283 tgtgcgagaagatgtgaaggtttctaaataagttcattgacgctacagaatcacttgaacacattcattatgataggaaaatgccctcaagttgtggtaa 16791382  T
Q  360 tctttggnnnnnnnnnncttctaccattgaaatctatgagtatgtcattattttctctcacttcttgcaagaatcttttagtggaaataaaaaacataaa 459  Q
    |||||||           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16791383 tctttggttttttttt--ttccaccattgaaatctatgagtatgtcattattttctctcacttcttgcaagaatcttttagtggaaataaaaaacataaa 16791480  T
Q  460 caatcgattctc-----tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaa 554  Q
    ||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||    
T  16791481 caatcgattctcgactatgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccatcgaacaaagtgaagggtcacgtattaaaa 16791580  T
Q  555 tcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgatttt 628  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  16791581 tcatgtacaatgcagtgactatcaatcagaaccatgtatctcacttcacttatgataaaaaggtaagtgatttt 16791654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 16790982 - 16791136
Alignment:
Q  10 gcaaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataat---t 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  16790982 gcaaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaat 16791081  T
Q  107 gtaatttaaatactttagtggcaagacttcaccttcgagaacaataaaggtcagt 161  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16791082 gtaatttaaatactttagtggcaagacttcaccttcaagaacaataaaggtcagt 16791136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 387 - 620
Target Start/End: Original strand, 16790002 - 16790240
Alignment:
Q  387 tgaaatctatgagtatgtcattattttctctcacttcttgcaagaatcttttagtggaaataaaaaa-cataaacaatcgatt------ctctgagatgg 479  Q
    ||||||||| ||||||||||||||||||||  |||||||||||||||| | |||||||||||||||| ||||||| |||||||      || ||||||||    
T  16790002 tgaaatctacgagtatgtcattattttctc--acttcttgcaagaatcatatagtggaaataaaaaaacataaacgatcgattgtttgactatgagatgg 16790099  T
Q  480 ttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtgactatcaa 579  Q
    |||| ||||||||||||||| ||||||||||  |||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||| |    
T  16790100 ttattgctgaaaaggaaaatgttgaaagtgcgctaggagtagcgaccgaacatagtgaaggatcaattgttaaaatcatgtacaatgcagtgactatcga 16790199  T
Q  580 tcggaaccacgtatctcacttcacttatgataaaaaggtaa 620  Q
    || |||||  |||||||||||||||||||||||||||||||    
T  16790200 tcagaaccttgtatctcacttcacttatgataaaaaggtaa 16790240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 16792895 - 16793045
Alignment:
Q  11 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata---attg 107  Q
    |||| |||||||||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||  |||||||||||||| |||||||||||   | ||    
T  16792895 caaaagtggttgcaaaaaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatg 16792994  T
Q  108 taatttaaatactttagtggcaagacttcaccttcgagaacaataaaggtc 158  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16792995 taatttaaatactttagtggcaagacttcgccttcgagaacaataaaggtc 16793045  T

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Target: chr8; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 472 - 628
Target Start/End: Complemental strand, 16616983 - 16616827
Alignment:
Q  472 tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtg 571  Q
    |||| ||||||||||| ||||||||| | ||||||||| | | ||||||||  |||||||||||||||||| |||| | ||||| |||||||||||||||    
T  16616983 tgaggtggttatcgctaaaaaggaaattgttgaaagtgtagttggagtagctgccgaacaaagtgaaggattacttgtgaaaattatgtacaatgcagtg 16616884  T
Q  572 actatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgatttt 628  Q
     |||||||||  ||||  ||||||||||| |||| |||||||||||||| |||||||    
T  16616883 tctatcaatcaaaaccttgtatctcactttacttctgataaaaaggtaaatgatttt 16616827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 16617261 - 16617353
Alignment:
Q  11 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata 103  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||  |||||||| |||||||| ||||||||    
T  16617261 caaaggtggttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaata 16617353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 472 - 628
Target Start/End: Complemental strand, 16792621 - 16792466
Alignment:
Q  472 tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtg 571  Q
    |||| ||||||||| ||||||||||||||| ||||||||  ||||||||||   |||||||| |||| ||| |||| ||||||||||||||| |||| ||    
T  16792621 tgaggtggttatcgttgaaaaggaaaatat-gaaagtgcgctaggagtagctttcgaacaaattgaatgattacttgttaaaatcatgtacattgcaatg 16792523  T
Q  572 actatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaagtgatttt 628  Q
    ||||||||||  | ||| ||||||||||||| || ||||||||| |||| |||||||    
T  16792522 actatcaatcaaagccatgtatctcacttcatttctgataaaaatgtaaatgatttt 16792466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 16628732 - 16628535
Alignment:
Q  429 agaatcttttagtggaaataaaaaacataaacaatcgatt------ctctgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagc 522  Q
    ||||| ||||||  ||||||||| ||||||| ||||||||      || |||| ||||||||| ||||||||||||| |||||||   | ||||| ||||    
T  16628732 agaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatcggtgaaaaggaaaatgttgaaaggttagtaggattagc 16628633  T
Q  523 caccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaa 620  Q
      ||||||||  || ||||| |||| ||||||||||||||||||||||||| |||||||  ||||  ||||||||||||||||  |||||||||||||    
T  16628632 ttccgaacaagttggaggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaa 16628535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 429 - 620
Target Start/End: Complemental strand, 16637613 - 16637416
Alignment:
Q  429 agaatcttttagtggaaataaaaaacataaacaatcgatt------ctctgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagc 522  Q
    ||||| ||||||  ||||||||| ||||||| ||||||||      || |||| ||||||||| ||||||||||||| |||||||   | ||||| ||||    
T  16637613 agaatgttttagcagaaataaaagacataaataatcgattgtttgactgtgaggtggttatcggtgaaaaggaaaatgttgaaaggttagtaggattagc 16637514  T
Q  523 caccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggtaa 620  Q
      ||||||||  || ||||| |||| ||||||||||||||||||||||||| |||||||  ||||  ||||||||||||||||  |||||||||||||    
T  16637513 ttccgaacaagttggaggattacttgttaaaatcatgtacaatgcagtgaccatcaatcaaaaccttgtatctcacttcacttccgataaaaaggtaa 16637416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 472 - 615
Target Start/End: Complemental strand, 16790709 - 16790567
Alignment:
Q  472 tgagatggttatcgctgaaaaggaaaatattgaaagtgcattaggagtagccaccgaacaaagtgaaggatcacttattaaaatcatgtacaatgcagtg 571  Q
    |||| ||||||||| ||||| ||||||||| ||||||||  ||||||||||   |||||||| |||| ||| |||| |||||||||||||||||||| ||    
T  16790709 tgaggtggttatcgttgaaagggaaaatat-gaaagtgcgctaggagtagctttcgaacaaattgaatgattacttgttaaaatcatgtacaatgcaatg 16790611  T
Q  572 actatcaatcggaaccacgtatctcacttcacttatgataaaaa 615  Q
    ||||||||||  | ||| |||||||| ||||||| |||||||||    
T  16790610 actatcaatcaaagccatgtatctcatttcacttctgataaaaa 16790567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 16629585 - 16629734
Alignment:
Q  11 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattg 107  Q
    |||||||||||| | |||||  | || |||||||| ||||||||| ||||||| |||||||||||  |||| ||| ||||||||||||||||   || |     
T  16629585 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt 16629684  T
Q  108 taatttaaatactttagtggcaagacttcaccttcgagaacaataaaggt 157  Q
    || || ||| ||||||||||| ||||| |||||||| ||  |||||||||    
T  16629685 tagttcaaacactttagtggcgagactccaccttcgggactaataaaggt 16629734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 16638466 - 16638615
Alignment:
Q  11 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattg 107  Q
    |||||||||||| | |||||  | || |||||||| ||||||||| ||||||| |||||||||||  |||| ||| ||||||||||||||||   || |     
T  16638466 caaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaatt 16638565  T
Q  108 taatttaaatactttagtggcaagacttcaccttcgagaacaataaaggt 157  Q
    || || ||| ||||||||||| ||||| |||||||| ||  |||||||||    
T  16638566 tagttcaaacactttagtggcgagactccaccttcgggactaataaaggt 16638615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 15110451 - 15110408
Alignment:
Q  12 aaaggtggttgcaacaaagctgcgaggcattttctatcctgtgg 55  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  15110451 aaaggtggttgcaacaaagctgcgatgcattttccatcctgtgg 15110408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 16629277 - 16629369
Alignment:
Q  11 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata 103  Q
    |||||| ||||| | |||||  |||| |||| ||| ||||||||| ||||||| |||||||||||  |||||||  | |||||||||||||||    
T  16629277 caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata 16629369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 16638158 - 16638250
Alignment:
Q  11 caaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata 103  Q
    |||||| ||||| | |||||  |||| |||| ||| ||||||||| ||||||| |||||||||||  |||||||  | |||||||||||||||    
T  16638158 caaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata 16638250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 539 - 618
Target Start/End: Complemental strand, 38877446 - 38877367
Alignment:
Q  539 ggatcacttattaaaatcatgtacaatgcagtgactatcaatcggaaccacgtatctcacttcacttatgataaaaaggt 618  Q
    |||| |||| |||||||||||||||||||||||||||| |||| | |||  ||||||||||| || ||||||||||||||    
T  38877446 ggattacttcttaaaatcatgtacaatgcagtgactatgaatcaggaccttgtatctcacttgacatatgataaaaaggt 38877367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 38877741 - 38877856
Alignment:
Q  14 aggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaa 110  Q
    |||||||||||||||||||| ||||||||||| || |||||| |  |||| ||| |||||||  |||||||| ||||| ||||||||||   || |||||    
T  38877741 aggtggttgcaacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatgtaa 38877840  T
Q  111 tttaaatactttagtg 126  Q
     ||||| |||||||||    
T  38877841 attaaacactttagtg 38877856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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