View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_41 (Length: 411)
Name: NF1371_low_41
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 33050344 - 33050454
Alignment:
| Q |
295 |
agagaccacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgt |
394 |
Q |
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| T |
33050344 |
agagaccacacagttaagcttgtcaaagagaaaagaagaaacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgt |
33050443 |
T |
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| Q |
395 |
aaggaggaaaa |
405 |
Q |
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| T |
33050444 |
aaggaggaaaa |
33050454 |
T |
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Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 299 - 405
Target Start/End: Original strand, 42807121 - 42807227
Alignment:
| Q |
299 |
accacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgtaagg |
398 |
Q |
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| T |
42807121 |
accacacagttaagcttgtcaaagagaaaagaagaaacagagttgcaaggaagaggagtcaaggggaagccgtcacagggaggctaccacgcacgtaagg |
42807220 |
T |
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| Q |
399 |
aggaaaa |
405 |
Q |
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| T |
42807221 |
aggaaaa |
42807227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 295 - 381
Target Start/End: Original strand, 42764370 - 42764453
Alignment:
| Q |
295 |
agagaccacacagttaagcttgtcaaagagaaaagaagagacagagttgcaaggaagaggagtcaaggggaagccgtcacagggagg |
381 |
Q |
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| T |
42764370 |
agagaccacacagttaagcttgtcaaagagaaaagaa---acagagttgcaaggaagaggagtcagggggaagccgtcacagggagg |
42764453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 279339 - 279280
Alignment:
| Q |
86 |
aacacaataaaacagtgtttgtattcatcttatttttccattcaatacgaacaccaacatt |
146 |
Q |
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| T |
279339 |
aacacaatgaaacagtgtttgtattcatcttatttttcca-tcaataccaacaccaacatt |
279280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 636513 - 636572
Alignment:
| Q |
86 |
aacacaataaaacagtgtttgtattcatcttatttttccattcaatacgaacaccaacatt |
146 |
Q |
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| T |
636513 |
aacacaatgaaacagtgtttgtattcatcttatttttcca-tcaataccaacaccaacatt |
636572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 822316 - 822375
Alignment:
| Q |
86 |
aacacaataaaacagtgtttgtattcatcttatttttccattcaatacgaacaccaacatt |
146 |
Q |
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| T |
822316 |
aacacaatgaaacagtgtttgtattcatcttatttttcca-tcaataccaacaccaacatt |
822375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 297
Target Start/End: Complemental strand, 24786897 - 24786783
Alignment:
| Q |
183 |
tatcaaatgctcatctaaaactgaagtgcatacttcaggtaaagaacataagaaagaataggttggggcagaacctactacattaactggagaaccgata |
282 |
Q |
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||||||||| |||| |||||| ||||| | ||| ||||||||||| ||| || ||| || ||||| ||||||||| |||| ||| |||||||||||| |
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| T |
24786897 |
tatcaaatgttcatataaaacgcaagtgtagactgcaggtaaagaaaataggagggaacgggctggggtagaacctaccacatcaacaggagaaccgata |
24786798 |
T |
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| Q |
283 |
aagacagccaaaaga |
297 |
Q |
| |
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| T |
24786797 |
aagacagcaaaaaga |
24786783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 11441357 - 11441294
Alignment:
| Q |
86 |
aacacaataaaacagtgtttgtattcatcttatttttccattcaatacgaacaccaacattgtta |
150 |
Q |
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|||||||| ||| || |||||||||||||||||||||||| ||||||| | ||||||||||||| |
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| T |
11441357 |
aacacaattaaatagcgtttgtattcatcttatttttcca-tcaataccagtaccaacattgtta |
11441294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 14020274 - 14020233
Alignment:
| Q |
183 |
tatcaaatgctcatctaaaactgaagtgcatacttcaggtaa |
224 |
Q |
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||||||| | |||||||||||| ||||||||||||||||||| |
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| T |
14020274 |
tatcaaaggttcatctaaaactcaagtgcatacttcaggtaa |
14020233 |
T |
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