View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_47 (Length: 382)
Name: NF1371_low_47
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 51935011 - 51935197
Alignment:
| Q |
72 |
catctccaagaatataccggttatgatcggtagaaagagtagtctttccagtacctaagagatcacaaaattaaccagattaatagaaactcaatactac |
171 |
Q |
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| T |
51935011 |
catctccaatcaaataccggttatgatcggtagaaagagtagtctttccagtacctaagagatcacaaaattaaccagattaatagaaactcaatactac |
51935110 |
T |
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| Q |
172 |
acgcaaacatcaattgataaaaggtagtcatcaaacttcacctgataatccaaaaaagagcgcaacagcgccatttttgcccatatt |
258 |
Q |
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| T |
51935111 |
acgcaaacatcaattgataaaaggtagttatcaaacttcacctgataatccaaaaaagagcgcaacatcgccatttttgcccatatt |
51935197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 12995644 - 12995680
Alignment:
| Q |
92 |
ttatgatcggtagaaagagtagtctttccagtaccta |
128 |
Q |
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| T |
12995644 |
ttatgatcagtagaaagagttgtctttccagtaccta |
12995680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 13070294 - 13070330
Alignment:
| Q |
92 |
ttatgatcggtagaaagagtagtctttccagtaccta |
128 |
Q |
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| T |
13070294 |
ttatgatcagtagaaagagttgtctttccagtaccta |
13070330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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