View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_5 (Length: 625)
Name: NF1371_low_5
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 47 - 615
Target Start/End: Complemental strand, 42888638 - 42888064
Alignment:
| Q |
47 |
ggtaagcattgaaagtacatcattcagacttgaaaatatctttgtctacatttgcactccaccat------ggattctgataagatggaaccccaagtca |
140 |
Q |
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| T |
42888638 |
ggtaagcattgaaagtacatcgatcagacttgaaaatatctttgtctacatttgcactccaccatcaccatggattctgataagatggaaccccaagtca |
42888539 |
T |
|
| Q |
141 |
aattatgttttcgatgactgttttaagtgtttttgacttattttagctgagttgatcgtagcgatggtctcatatttacattcaatattttacgtacgaa |
240 |
Q |
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| T |
42888538 |
aattatgttttcgatgactgtttttagtgtttttgacttattttagctgagttgatcgtagcgatggtctcatatttacattcaatattttacgtacgaa |
42888439 |
T |
|
| Q |
241 |
tacacacataatatacaaaattatatactagaggtaggacttaatcgatccttttatcaaagaacttgttcattgattctcgttgactaagaaaaaccac |
340 |
Q |
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| T |
42888438 |
tacacacataatatacaaaattatatactagaggtaggaattaatcgatccttttatcaaagaacttgttcattgattctcgttgactaagaaaaaccac |
42888339 |
T |
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| Q |
341 |
tttgacacggatatgatttagattctatggtgaatctttctctataatagcagtaacctatattttgatgacaatatcacacgttcacatactaaaatgc |
440 |
Q |
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| T |
42888338 |
tttgacacggatatgatttagattctatggtgaatctttctctataatagcagtaacctatattttgatgacaatatcacacgttcacatactaaaatgc |
42888239 |
T |
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| Q |
441 |
agtccgtacggttaaaccgtcagtggaaaaatcagtatatatattgatactataaaaaggaaaaggannnnnnnnctttctggcaaatcatatgcacatt |
540 |
Q |
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| T |
42888238 |
agtccgtacggttaaaccgtcagtggaaaaatcagtatatatattgatactataaaaaggaaaaggattttttttctttctggcaaatcatatgcacatt |
42888139 |
T |
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| Q |
541 |
ttatcatgcaaacttcatctcaatacgtgatatacatatagattctatagccgctaggagatacgatattctgtg |
615 |
Q |
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| T |
42888138 |
ttatcatgcaaacttcatctcaatacgtgatatacatatagattctatagccgctaggagatacgatattctgtg |
42888064 |
T |
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