View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_50 (Length: 369)
Name: NF1371_low_50
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 4977858 - 4978181
Alignment:
| Q |
17 |
tgaaagacagtggaaggcttccaacctgttacccaaaggtgagcattttccaaaggagtaagccatgttggtgtaaaaaacaccaaaacatcttcatgtg |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4977858 |
tgaaagactgtggaaggcttccaacctgttacccaaaggtgagcattttccaaaggagtaagccatgttggtgtaaaaaacaccaaaacatcttcatgtg |
4977957 |
T |
|
| Q |
117 |
ctgcaccccattttacagtgtagtattctttcacatgagctgtgacttttgaaacaagtgcttttagttcttgttcattcattgttacctcagnnnnnnn |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4977958 |
ctgcaccccattttacagtgtagtattctttcacatgagctgtgacttttgaaacaagtgcttttagttcttgttcattcattgttacctcagttttttt |
4978057 |
T |
|
| Q |
217 |
ctttgatacttcgagaagttgacgttgaatctcttccagcttcacaacccatttctcgtagaattcagagaaactctccacaacaaggttcttcatgaat |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4978058 |
ctttgatatttcgagaagttgacgttgaatctcttccagcttcacaacccatttctcgtagaattcagagaacctctccacaacaaggttcttcatgaat |
4978157 |
T |
|
| Q |
317 |
aatatttattagttttgaaaaaga |
340 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
4978158 |
aatatttattagttttgaaaaaga |
4978181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 4995765 - 4996088
Alignment:
| Q |
17 |
tgaaagacagtggaaggcttccaacctgttacccaaaggtgagcattttccaaaggagtaagccatgttggtgtaaaaaacaccaaaacatcttcatgtg |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4995765 |
tgaaagactgtggaaggcttccaacctgttacccaaaggtgagcattttccaaaggagtaagccatgttggtgtaaaaaacaccaaaacatcttcatgtg |
4995864 |
T |
|
| Q |
117 |
ctgcaccccattttacagtgtagtattctttcacatgagctgtgacttttgaaacaagtgcttttagttcttgttcattcattgttacctcagnnnnnnn |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4995865 |
ctgcaccccattttacagtgtagtattctttcacatgagctgtgacttttgaaacaagtgcttttagttcttgttcattcattgttacctcagttttttt |
4995964 |
T |
|
| Q |
217 |
ctttgatacttcgagaagttgacgttgaatctcttccagcttcacaacccatttctcgtagaattcagagaaactctccacaacaaggttcttcatgaat |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4995965 |
ctttgatatttcgagaagttgacgttgaatctcttccagcttcacaacccatttctcgtagaattcagagaacctctccacaacaaggttcttcatgaat |
4996064 |
T |
|
| Q |
317 |
aatatttattagttttgaaaaaga |
340 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4996065 |
aatatttattagttttgaaaaaga |
4996088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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