View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_low_51 (Length: 367)

Name: NF1371_low_51
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_low_51
NF1371_low_51
[»] chr2 (5 HSPs)
chr2 (125-357)||(40543780-40544012)
chr2 (98-349)||(18348779-18349033)
chr2 (282-345)||(18346799-18346862)
chr2 (280-349)||(31112473-31112542)
chr2 (280-349)||(25993016-25993085)
[»] chr6 (1 HSPs)
chr6 (98-144)||(13841023-13841069)
[»] scaffold0134 (1 HSPs)
scaffold0134 (163-212)||(12531-12580)
[»] chr7 (1 HSPs)
chr7 (147-198)||(230750-230801)
[»] chr3 (2 HSPs)
chr3 (147-198)||(12488378-12488429)
chr3 (281-319)||(14900706-14900744)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 125 - 357
Target Start/End: Complemental strand, 40544012 - 40543780
Alignment:
Q  125 actgcatacatattgtcctctccatgaactttattgtatctcacatttttagggaaggaaatcagtgtgctgatattttagctaatgtagggttaaactc 224  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40544012 actgcctacatactgtcctctccatgaactttattgtatctcacatttttagggaaggaaatcagtgtgctgatattttagctaatgtagggttaaactc 40543913  T
Q  225 tgatgtgcctatagtttggttggagaaaccttcttgtattaattcttcttttgggcaaaacaaattagggttacctaattataggtttgtaaattactag 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40543912 tgatgtgcctatagtttggttggagaaaccttcttgtattaattcttcttttgggcaaaaaaaattagggttacctaattataggtttgtaaattactag 40543813  T
Q  325 ggaggtcttggtttgatccccctccgctctctg 357  Q
    |||||||||||||||||||||||||||| ||||    
T  40543812 ggaggtcttggtttgatccccctccgctttctg 40543780  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 98 - 349
Target Start/End: Original strand, 18348779 - 18349033
Alignment:
Q  98 cttggaagttaagaaaccactggtataactgcatacatattgt---cctctccatgaactttattgtatctcacatttttagggaaggaaatcagtgtgc 194  Q
    |||||||||||||||||   |||  |||||||||| ||||| |   |||||||||||| || ||||  |||||||| |||||||||| |||||| |||||    
T  18348779 cttggaagttaagaaactgatggcttaactgcataaatattattatcctctccatgaatttcattgattctcacatatttagggaagaaaatcaatgtgc 18348878  T
Q  195 tgatattttagctaatgtagggttaaactctgatgtgcctatagtttggttggagaaaccttcttgtattaattcttcttttgggcaaaacaaattaggg 294  Q
     |||| | ||||||||||||||  ||||||  ||||||||||||||||||| || || ||||||||||| ||||| |||||||    |||||||||||||    
T  18348879 ggataatctagctaatgtagggcaaaactcaaatgtgcctatagtttggtttgaaaagccttcttgtataaattcatcttttgctacaaacaaattaggg 18348978  T
Q  295 ttacctaattataggtttgtaaattactagggaggtcttggtttgatccccctcc 349  Q
    |||||||||||||| |||||| ||||||| |||||| |||||||| |||||||||    
T  18348979 ttacctaattatagatttgtacattactaaggaggtgttggtttggtccccctcc 18349033  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 345
Target Start/End: Complemental strand, 18346862 - 18346799
Alignment:
Q  282 aaacaaattagggttacctaattataggtttgtaaattactagggaggtcttggtttgatcccc 345  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||| |||||    
T  18346862 aaacaaattagggttacctaattatagatttgtatattactaaggaggtcttcgtttggtcccc 18346799  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 31112542 - 31112473
Alignment:
Q  280 caaaacaaattagggttacctaattataggtttgtaaattactagggaggtcttggtttgatccccctcc 349  Q
    |||||||| |||||  | ||||| ||||||||||||||||||   |||||| ||||||||||||||||||    
T  31112542 caaaacaagttaggaatgcctaactataggtttgtaaattacataggaggttttggtttgatccccctcc 31112473  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 25993085 - 25993016
Alignment:
Q  280 caaaacaaattagggttacctaattataggtttgtaaattactagggaggtcttggtttgatccccctcc 349  Q
    |||||| ||||||||||||||||||  || ||||||  ||| || |||||| || |||||||||||||||    
T  25993085 caaaacgaattagggttacctaatttgagatttgtaccttaatatggaggttttagtttgatccccctcc 25993016  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 13841069 - 13841023
Alignment:
Q  98 cttggaagttaagaaaccactggtataactgcatacatattgtcctc 144  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||||    
T  13841069 cttggaagttaagcaaccgttggtataactgcatacatattgtcctc 13841023  T

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Target: scaffold0134 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 12580 - 12531
Alignment:
Q  163 tctcacatttttagggaaggaaatcagtgtgctgatattttagctaatgt 212  Q
    |||||||||||||||||||| ||||| |||||||||| | ||||||||||    
T  12580 tctcacatttttagggaagggaatcaatgtgctgatactctagctaatgt 12531  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 230750 - 230801
Alignment:
Q  147 catgaactttattgtatctcacatttttagggaaggaaatcagtgtgctgat 198  Q
    |||||| ||| || ||||||| |||||||| |||||||||||||||||||||    
T  230750 catgaattttgttatatctcatatttttagagaaggaaatcagtgtgctgat 230801  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 12488378 - 12488429
Alignment:
Q  147 catgaactttattgtatctcacatttttagggaaggaaatcagtgtgctgat 198  Q
    |||||| ||| |||||||||| |||||||| |||||||||||||||| ||||    
T  12488378 catgaattttgttgtatctcatatttttagagaaggaaatcagtgtgttgat 12488429  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 14900744 - 14900706
Alignment:
Q  281 aaaacaaattagggttacctaattataggtttgtaaatt 319  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  14900744 aaaacaaattagggtttcctaattatcggtttgtaaatt 14900706  T

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