View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_52 (Length: 366)
Name: NF1371_low_52
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 97 - 358
Target Start/End: Complemental strand, 22062562 - 22062301
Alignment:
| Q |
97 |
cttccaaccaaccacaaacaacactatccatttctctagctgcttttttcatctccttcacatgtcctcccaaatcaagccatccaagaaatggaattgc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22062562 |
cttccaaccaaccacaaacaacactatccatttctctagctgctttcttcatctccttcacatgtcctcccaaatcaagccatccaagaaatggaattgc |
22062463 |
T |
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| Q |
197 |
atcaccaaccacaaacaaacctgtcaaacgaaaaaactctctaaaaacccatctcacttttctcacttctctctcatcaccactttcacttgagtatctt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22062462 |
atcaccaaccacaaacaaacctgtcaaacgaaaaaactctctaaaaacccatctcacttttctcacttctctctcatcaccactttcatttgagtatctt |
22062363 |
T |
|
| Q |
297 |
ttcccagcaatcatcctcataatcacgttcaaattcatatcccctaaaaaacgtttcatctc |
358 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22062362 |
ttcccagcaatcatcctcataatcacattcaaattcatatcccctaaaaaacgtttcatctc |
22062301 |
T |
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