View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_54 (Length: 361)
Name: NF1371_low_54
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 8910083 - 8910397
Alignment:
| Q |
1 |
tcagttgaacaagatttacaaagatcagtggtattaattcaaatatttggatgaaacttattttggatgaactcattggtcttctcatacggagtcaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8910083 |
tcagttgaacaagatttacaaagatcagtggtattaattcaaatatttggatgaaacttattttggatgaactcattggtcttctcatacggagtcaatc |
8910182 |
T |
|
| Q |
101 |
ttgctcaagaaagcgtcacacaatgaacgtatatgtctctatcaacaaagttcaacccgtggttcgccacactggaggaataattaacctttctgtttga |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
8910183 |
ttgctcaagaaagcgtcacacaatgaacgtatatgtctctatcgacaaagttcaactcgtggttcgccacactggaggaa----taacctttctgtttga |
8910278 |
T |
|
| Q |
201 |
ctcaaccctcgttagtatttggacgaaaaatttgaatcaacaaagaatatggccttacccataatttcattatgcttcaatgaatggaccagctctaagt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8910279 |
ctcaaccctcgttagtatttggacgaaaaatttgaatcaacaaagaatatggccttacccataatttcattatgcttcaatgaatggaccaactctaagt |
8910378 |
T |
|
| Q |
301 |
gttgcatacatatcatgat |
319 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
8910379 |
gttgcatacatatcatgat |
8910397 |
T |
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