View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_57 (Length: 347)
Name: NF1371_low_57
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 118 - 310
Target Start/End: Complemental strand, 23839673 - 23839482
Alignment:
| Q |
118 |
ttaaaagctatcatacataaaactcaaacaaattttgtgtctagcttacaatcttaataggaatgatttatttataacattattttctcttacaaatgct |
217 |
Q |
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| T |
23839673 |
ttaaaaacaatcacacataaaactcaaacaaattttgtgcctgacttacaatcttaataggaatgatttatttataacatttttttctcttacaaatggt |
23839574 |
T |
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| Q |
218 |
acatgaaca-aattaaaggacaacaaatatgacaaacattgactttacaaaattagatatgttatcaaacatatcttttcggatggtactatac |
310 |
Q |
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| T |
23839573 |
acat-aacatgaacaaaggatagcaaatatgacaaacattgacttcacaaaatcaagtatgttattaaacatatcttttc-gatggtactatac |
23839482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 6610962 - 6611081
Alignment:
| Q |
171 |
ttaataggaatgatttatttataaca-ttattttctcttacaaatgctacatgaaca-aattaaaggacaacaaatatgacaaacattgactttacaaaa |
268 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||| |||| | |||||| | ||||||||||||||||| ||||||||||| |
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| T |
6610962 |
ttaataggaatgatttatttataacattttttttctcttacaaatgctacat-aacatgaacaaaggatatcaaatatgacaaacattaactttacaaaa |
6611060 |
T |
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| Q |
269 |
ttagatatgttatcaaacatatct |
292 |
Q |
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| T |
6611061 |
t---gtatgttatcaaacatatct |
6611081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 173 - 310
Target Start/End: Complemental strand, 14989345 - 14989209
Alignment:
| Q |
173 |
aataggaatgatttatttataacattattttctcttacaaatgctacatgaacaa----attaaaggacaacaaatatgacaaacattgactttacaaaa |
268 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||| | || | ||||||||||||||||| |||| |||||||||| |
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| T |
14989345 |
aatatgaatgatttatttataacatttttttctcttacaaatgctacatatataacatgaacaaaggacaacaaatatg------attggctttacaaaa |
14989252 |
T |
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| Q |
269 |
ttagatatgttatcaaacatatct-tttcggatggtactatac |
310 |
Q |
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|||| |||||||||||| |||||| ||| ||||| |||||||| |
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| T |
14989251 |
ttaggtatgttatcaaatatatctcttttggatgatactatac |
14989209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 14989403 - 14989360
Alignment:
| Q |
40 |
actcaacgattgcaagtccttttcaaaaactcattagttgcaac |
83 |
Q |
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| T |
14989403 |
actcaacaattgcaagtccttttcaaaaactcattagttgcaac |
14989360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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