View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_69 (Length: 303)
Name: NF1371_low_69
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 3400956 - 3400666
Alignment:
| Q |
1 |
tctttcattgttctgttaagtatatttttgtataaaaatctaattatctgtcaattttggcacataatgttattttttattgggacacgtggacatagat |
100 |
Q |
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| T |
3400956 |
tctttcattgttctgttaagtatatttttgtataaaaatctaattatttgtcaattttggcacataatgttattttttattgggacacgtggacatagat |
3400857 |
T |
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| Q |
101 |
atacacacagacaagtcatgatttgaatgcattatagatagagtaattacaaagtactattaatataatgagttnnnnnnngaaatagttattcagaaga |
200 |
Q |
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| T |
3400856 |
atacacacagacaagtcatgatttgaatgcattatagatagagtaattacaaagtactattaatataatgagttaaaaaaagaaatagttattcagaaga |
3400757 |
T |
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| Q |
201 |
gttgtcgattataatgggataaaatcttgcatttgtgcttctgcgttcaac-gtatagtatcaatttttataaaaatttcaattcattcct |
290 |
Q |
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| T |
3400756 |
gttgtcgattataatgggataaaatcttgcatttgtgcttctgcgttcaactgtatagtatcaatttttataaaaatttcaattcattcct |
3400666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 21533260 - 21533356
Alignment:
| Q |
38 |
atctaattatctgtcaattttggcacataatgttattttttattgggacacgtggacatagatatacacacagacaagtcatgatttgaatgcatta |
134 |
Q |
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| T |
21533260 |
atctagttatatgtcaattttggaaaacaatgttatttttgattaggacacttggacatagatatacacagagacaagtcatgatttgaaagcatta |
21533356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 41574446 - 41574356
Alignment:
| Q |
68 |
tgttattttttattgggacacgtggacatagatatacacacagacaagtcatgatttgaatgcattatagatagagtaattacaaagtact |
158 |
Q |
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| T |
41574446 |
tgttattttttattaggacgcattgtcatagacatacacagagacaagtcatgatttgaatgcattatagctagagtaattaaaaattact |
41574356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 41574337 - 41574305
Alignment:
| Q |
187 |
agttattcagaagagttgtcgattataatggga |
219 |
Q |
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| T |
41574337 |
agttattcagaagagtggtcgattataatggga |
41574305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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