View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_low_77 (Length: 275)

Name: NF1371_low_77
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_low_77
NF1371_low_77
[»] chr1 (2 HSPs)
chr1 (1-233)||(13932616-13932848)
chr1 (20-180)||(14005869-14006029)
[»] chr3 (19 HSPs)
chr3 (1-233)||(4061178-4061410)
chr3 (1-230)||(4080789-4081018)
chr3 (1-230)||(4129189-4129418)
chr3 (1-216)||(4115670-4115885)
chr3 (34-189)||(4140923-4141078)
chr3 (4-216)||(4092926-4093138)
chr3 (13-173)||(4123689-4123849)
chr3 (20-167)||(3914163-3914310)
chr3 (20-180)||(3884667-3884827)
chr3 (1-167)||(912144-912310)
chr3 (49-150)||(10888829-10888930)
chr3 (45-150)||(11160462-11160567)
chr3 (34-98)||(11131523-11131587)
chr3 (34-110)||(11149339-11149415)
chr3 (62-137)||(10434502-10434577)
chr3 (62-152)||(10195209-10195299)
chr3 (49-150)||(8860809-8860910)
chr3 (62-143)||(10088326-10088407)
chr3 (62-143)||(10376297-10376378)
[»] scaffold0267 (1 HSPs)
scaffold0267 (11-173)||(17926-18088)
[»] scaffold0083 (1 HSPs)
scaffold0083 (62-143)||(50257-50338)
[»] chr8 (1 HSPs)
chr8 (125-170)||(18387289-18387334)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 13932616 - 13932848
Alignment:
Q  1 cttgatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgtta 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13932616 cttgatgttgcactgttggaaaagctgaacgtaacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgtta 13932715  T
Q  101 agcaatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcggcgcaaagtggaaggtgagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13932716 agcaatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcggcgcaaagtggaaggtgagga 13932815  T
Q  201 tgaaacccaaactgcttctactaaggtgctcaa 233  Q
    |||||||||||||||||||||||||||||||||    
T  13932816 tgaaacccaaactgcttctactaaggtgctcaa 13932848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 14006029 - 14005869
Alignment:
Q  20 aaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgtt 119  Q
    ||||||||||  | |||||| | ||||| ||||||||  |  ||||||||||||||||||| ||||||||||||||||| ||  |||||||||||  | |    
T  14006029 aaaagctgaaaataacactgttaagtcttcaagctgtgttgaatgatgctgaggagaagcaaatcaccaaccctgctgtcaaagaatggctggatgagct 14005930  T
Q  120 gcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcgg 180  Q
       | ||| ||| ||||| |||||||||||| ||||||| |||||||| ||||||||||||    
T  14005929 cacacatgttgtttttgatgctgatgatttgcttgatgagatcaacactgaggctttgcgg 14005869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4061410 - 4061178
Alignment:
Q  1 cttgatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgtta 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4061410 cttgatgttgcactgttggaaaagctgaacgtaacactgctgagtctgcaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgtca 4061311  T
Q  101 agcaatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcggcgcaaagtggaaggtgagga 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  4061310 agaaatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgacgaaatcaacactgaggctttgcagcgcaaagtggaaggtgagga 4061211  T
Q  201 tgaaacccaaactgcttctactaaggtgctcaa 233  Q
    ||||| |||||||||||||||||||||||||||    
T  4061210 tgaaaaccaaactgcttctactaaggtgctcaa 4061178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4081018 - 4080789
Alignment:
Q  1 cttgatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgtta 100  Q
    ||||| ||| |||| ||||||||||||||| | |||||| ||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| |    
T  4081018 cttgacgttccacttttggaaaagctgaacataacactgatgagtctgcaagctgtactgaatgatgctgaggagaagcagatcaccaaccctgctgtca 4080919  T
Q  101 agcaatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcggcgcaaagtggaaggtgagga 200  Q
    |||||||||||||| || |||||||||||||||||||||||||| ||||||| || ||||||||||| ||||| |||||| ||||||||||||  | | |    
T  4080918 agcaatggctggatttgctgcgagatgctgtctttgaagctgataatttgttagacgaaatcaacactgaggcattgcggtgcaaagtggaagccgggta 4080819  T
Q  201 tgaaacccaaactgcttctactaaggtgct 230  Q
    |||||| ||||||||| |||| ||||||||    
T  4080818 tgaaactcaaactgctactaccaaggtgct 4080789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4129189 - 4129418
Alignment:
Q  1 cttgatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgtta 100  Q
    ||||| |||||||| ||||||||||||||  | ||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  4129189 cttgacgttgcacttttggaaaagctgaagataacaatgttgagtcttcaagctgtacttcatgatgctgaggagaaacagatcaccaaccctgctgtca 4129288  T
Q  101 agcaatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcggcgcaaagtggaaggtgagga 200  Q
    |||||||||||||  || |||  |||||||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||   ||||| |||| |||| |    
T  4129289 agcaatggctggaaatgctgcatgatgctgtctttgaagctgacgatttatttgacgaaatcaacacggaggcattgcggtcaaaagttgaagctgagta 4129388  T
Q  201 tgaaacccaaactgcttctactaaggtgct 230  Q
    |||||||| ||||||| || || |||||||    
T  4129389 tgaaacccgaactgctactgctcaggtgct 4129418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 4115885 - 4115670
Alignment:
Q  1 cttgatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgtta 100  Q
    ||||| |||||||||||||||||||||||  | |||||||||||||| |||||||||||  |||||||||||||||| |||||||| || |||||||| |    
T  4115885 cttgacgttgcactgttggaaaagctgaagataacactgctgagtcttcaagctgtactgaatgatgctgaggagaaacagatcactaatcctgctgtca 4115786  T
Q  101 agcaatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcggcgcaaagtggaaggtgagga 200  Q
    || | ||| || || || ||| |||||||||||||||||| || ||||||||||| ||||||||||| ||| | |||||| | |||||||||| |||| |    
T  4115785 aggagtggttgaatatgctgcaagatgctgtctttgaagcagaagatttgtttgacgaaatcaacactgagtcattgcggtgtaaagtggaagctgagta 4115686  T
Q  201 tgaaacccaaactgct 216  Q
    |||||||||| |||||    
T  4115685 tgaaacccaatctgct 4115670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 4140923 - 4141078
Alignment:
Q  34 acactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtct 133  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||  ||||||||||| || ||| |||||||||||    
T  4140923 acactgctgagtcttcaagctgtacttcatgatgctgaggagaaacaaatcaccaatcctgctgttaaagaatggctggatatgctgcaagatgctgtct 4141022  T
Q  134 ttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcggcgcaaagtg 189  Q
     |||||||||  |||||||||| ||||||||||| ||||| |||||| ||||||||    
T  4141023 atgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagtg 4141078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 4093138 - 4092926
Alignment:
Q  4 gatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagc 103  Q
    |||||| |||||||||| ||||||||  | |||||| ||||||| |||||||||||  |||||||||||||||| |||||| | ||  ||||||| |||     
T  4093138 gatgttccactgttggataagctgaaaataacactgttgagtcttcaagctgtactgaatgatgctgaggagaaacagatcgctaattctgctgtcaagg 4093039  T
Q  104 aatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcggcgcaaagtggaaggtgaggatga 203  Q
    | ||| || || || ||| ||||||||| || |||||||| ||||||||||| ||||| ||||| ||| | |||||| ||| |||||||| |||| ||||    
T  4093038 agtggttgaatatgctgcaagatgctgtattcgaagctgaagatttgtttgacgaaattaacactgagtcattgcggtgcagagtggaagctgagtatga 4092939  T
Q  204 aacccaaactgct 216  Q
    ||||||| |||||    
T  4092938 aacccaatctgct 4092926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 4123689 - 4123849
Alignment:
Q  13 ctgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctgg 112  Q
    |||||||||||||||||  | |||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||  ||| ||| | ||||||     
T  4123689 ctgttggaaaagctgaaaataacactgctgagtcttcaagctgtactacatgatgctgaggacaaacagatcaccaaccctaatgtcaaggagtggctgc 4123788  T
Q  113 atctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggc 173  Q
    ||  | ||| || |||||| |||||||| || |||||||||||  ||||||||||| ||||    
T  4123789 ataggctgcaaggtgctgtatttgaagccgaagatttgtttgaccaaatcaacaccaaggc 4123849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 3914310 - 3914163
Alignment:
Q  20 aaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgtt 119  Q
    ||||||||||  | |||||| ||||||| ||||||||  |  |||||||||||||||| || |||||||||||||||||||| |||||| |||||    |    
T  3914310 aaaagctgaaaataacactgttgagtcttcaagctgtgatgaatgatgctgaggagaaacaaatcaccaaccctgctgttaaacaatggttggatgaact 3914211  T
Q  120 gcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacac 167  Q
      |||||||| ||| ||| |||||||||||||| ||||||||||||||    
T  3914210 aagagatgctctctatgatgctgatgatttgttggatgaaatcaacac 3914163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 3884667 - 3884827
Alignment:
Q  20 aaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgtt 119  Q
    ||||||||||  | |||||| | ||||| ||||||||  |  ||||||||||||||||||| ||||||||||||||||| ||  |||||||||||  | |    
T  3884667 aaaagctgaaaataacactgttaagtcttcaagctgtgttgaatgatgctgaggagaagcaaatcaccaaccctgctgtcaaagaatggctggatgagct 3884766  T
Q  120 gcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggctttgcgg 180  Q
       | ||| ||| ||||| |||||||||||| ||||||| |||||||| ||||||||||||    
T  3884767 cacacatgttgtttttgatgctgatgatttgcttgatgagatcaacactgaggctttgcgg 3884827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 912310 - 912144
Alignment:
Q  1 cttgatgttgcactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgtta 100  Q
    ||||||||| |||| ||||||||||| ||    |||||| ||||||| ||| |  ||||  |||||||||||||||| |||||||  || | |||||| |    
T  912310 cttgatgtttcactcttggaaaagctaaaaacaacactgttgagtcttcaatcaatactaaatgatgctgaggagaaacagatcagaaatcatgctgtca 912211  T
Q  101 agcaatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacac 167  Q
    | |||||| ||||    ||| |||||| | ||||| |||||||||||||||||||| ||||||||||    
T  912210 aacaatggttggaaaacttgagagatgttatctttcaagctgatgatttgtttgataaaatcaacac 912144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 10888829 - 10888930
Alignment:
Q  49 caagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtctttgaagctgatgatt 148  Q
    |||||||| ||  |||||||||||||||||||||||| ||||| |||||| || |||||||| |||   |||  ||||||||||||||| || || ||||    
T  10888829 caagctgtgctggatgatgctgaggagaagcagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgcggaggatt 10888928  T
Q  149 tg 150  Q
    ||    
T  10888929 tg 10888930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 11160567 - 11160462
Alignment:
Q  45 tctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtctttgaagctgat 144  Q
    |||||||||||| ||  ||||||| ||||||||| |||||| ||||| |||||| || |||||||| |||   |||  ||||||||||||||| || ||     
T  11160567 tctacaagctgtgctggatgatgcagaggagaagtagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgag 11160468  T
Q  145 gatttg 150  Q
    ||||||    
T  11160467 gatttg 11160462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 11131587 - 11131523
Alignment:
Q  34 acactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgt 98  Q
    |||||||||  ||| |||||||| ||  |||||||||||||||||||||||| ||||| ||||||    
T  11131587 acactgctggttcttcaagctgtgctggatgatgctgaggagaagcagatcaacaaccgtgctgt 11131523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 11149415 - 11149339
Alignment:
Q  34 acactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggct 110  Q
    |||||||||  ||| |||||||| ||  |||||||||| ||||||||||||| ||| |||||||| || ||||||||    
T  11149415 acactgctggttcttcaagctgtgctggatgatgctgatgagaagcagatcaacaatcctgctgtcaaacaatggct 11149339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 10434577 - 10434502
Alignment:
Q  62 atgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtctttga 137  Q
    ||||||| |||||||||||||||| ||| |||||||| || |||||||| |||   |||  |||||||||||||||    
T  10434577 atgatgcagaggagaagcagatcaacaaacctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttga 10434502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 10195209 - 10195299
Alignment:
Q  62 atgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtctttgaagctgatgatttgtt 152  Q
    ||||||| |||||||||||||||| ||| |||||||| || | |||||| |||   |||  ||||||||||||||| ||||| || |||||    
T  10195209 atgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgtt 10195299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 8860809 - 8860910
Alignment:
Q  49 caagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtctttgaagctgatgatt 148  Q
    |||||||| ||  ||||||| |||||||||||||||| ||| | |||||| || |||||||| |||   |||  ||||||| ||||||| ||||| ||||    
T  8860809 caagctgtgctggatgatgcagaggagaagcagatcaacaatcgtgctgtcaaacaatggcttgatgacttgaaagatgctctctttgatgctgaggatt 8860908  T
Q  149 tg 150  Q
    ||    
T  8860909 tg 8860910  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 10088326 - 10088407
Alignment:
Q  62 atgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtctttgaagctga 143  Q
    ||||||| |||||||||||||||| ||| |||||||| || | |||||| |||   |||  ||||||||||||||| |||||    
T  10088326 atgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctga 10088407  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 10376378 - 10376297
Alignment:
Q  62 atgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtctttgaagctga 143  Q
    ||||||| |||||||||||||||| ||| ||| |||| ||||||||||| |||   |||  ||||||| ||||||| |||||    
T  10376378 atgatgcagaggagaagcagatcatcaatccttctgtcaagcaatggcttgatgacttgaaagatgctatctttgatgctga 10376297  T

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Target: scaffold0267 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 17926 - 18088
Alignment:
Q  11 cactgttggaaaagctgaacgttacactgctgagtctacaagctgtacttcatgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggct 110  Q
    |||| ||||||||||| ||  | ||| |||||||||| |||||||||||  |||||||||| ||||| || |||||||| |||||||| |||||||||||    
T  17926 cactcttggaaaagctaaaattaacattgctgagtcttcaagctgtactgaatgatgctgaagagaaacaaatcaccaatcctgctgtcaagcaatggct 18025  T
Q  111 ggatctgttgcgagatgctgtctttgaagctgatgatttgtttgatgaaatcaacaccgaggc 173  Q
    || |    ||||||||| |||||||||||||||||||||||| ||  ||||||| ||||||||    
T  18026 gggtaacctgcgagatgttgtctttgaagctgatgatttgttagacaaaatcaataccgaggc 18088  T

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Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 50338 - 50257
Alignment:
Q  62 atgatgctgaggagaagcagatcaccaaccctgctgttaagcaatggctggatctgttgcgagatgctgtctttgaagctga 143  Q
    |||||||||||||||||||||||| ||| |||||||| || | |||||| |||   |||  ||||||||||||||| |||||    
T  50338 atgatgctgaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctga 50257  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 18387289 - 18387334
Alignment:
Q  125 atgctgtctttgaagctgatgatttgtttgatgaaatcaacaccga 170  Q
    ||||||||||||||| |||| ||||||||||  |||||||||||||    
T  18387289 atgctgtctttgaagttgataatttgtttgacaaaatcaacaccga 18387334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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