View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_80 (Length: 271)
Name: NF1371_low_80
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 2245490 - 2245718
Alignment:
| Q |
8 |
caccacagacagcacaaccttcttgggctgttcaaattttgaacctttaggttcctctgtttaccttcgccagagagatattttacaaaaattctacgaa |
107 |
Q |
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| T |
2245490 |
caccacagacagcacaaccttcttgggctgttcaaattttgaacctttaggttcctctgtttaccttcgccagagagatattttacaaaaattctacgaa |
2245589 |
T |
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| Q |
108 |
gaaagccgattaaacggctcattcgttccgtcttcattttcaaatcaatctctatctctactaaacccttcattatacacaacaaattcaacttcaattt |
207 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2245590 |
gaaagccgattaaacggctcattcgttccttcttcattttcaaatca------atctctactaaccccttcattatacacaacaaattcaacttcaattt |
2245683 |
T |
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| Q |
208 |
caagttcgttcacttctttaatgaacccttgtaag |
242 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
2245684 |
caagttcgttcacttctttggtgaacccttgtaag |
2245718 |
T |
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