View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_83 (Length: 265)
Name: NF1371_low_83
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_83 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7990178 - 7989946
Alignment:
| Q |
1 |
cggatatggatccactgcagtcagaaaagtatgcatgcagtcactacaatacaacttctaaatttatcactagatagatattagttcatacagctcagga |
100 |
Q |
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| T |
7990178 |
cggatatggatccactgcagtcggaaaagtatgca----gtcactacaatacaacttctaaatttatcactagatagatattagttcatacagctcagga |
7990083 |
T |
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| Q |
101 |
gtcatgatataaagttttgaccaaaattaagctatattatattcccgtagcttaattgaagactttcaaagcatactgaatacttttcccatgatattaa |
200 |
Q |
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| T |
7990082 |
gtcatgatataaagttttgaccaaatttaagctatattatattcccgtagcttaattgaagactttcaaagcatactgaatacttttcccatgatattaa |
7989983 |
T |
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| Q |
201 |
aaatgaaaaatcaaatttaacagaaacagtgataact |
237 |
Q |
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| T |
7989982 |
aaatgaaaaatcaaatttaacagaaacagtgataact |
7989946 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 40616519 - 40616584
Alignment:
| Q |
142 |
ttcccgtagcttaattgaagactttcaaagcatactgaatacttttcccatgatattaaaaatgaaa |
208 |
Q |
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| T |
40616519 |
ttcccatagcttaattgaagactttcaaagcatactgaatacttttcccatga-attaaaaatgaaa |
40616584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 21158334 - 21158281
Alignment:
| Q |
57 |
tctaaatttatcactagatagatattagttcatacagctcaggagtcatgatat |
110 |
Q |
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| T |
21158334 |
tctaaaattatcagtagatagatattagttcatacaacttaggagtcatgatat |
21158281 |
T |
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Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 17576 - 17624
Alignment:
| Q |
71 |
tagatagatattagttcatacagctcaggagtcatgatataaagttttg |
119 |
Q |
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| T |
17576 |
tagatagatattagttcatacaacttaagagtcatgatataaagttttg |
17624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 63107 - 63161
Alignment:
| Q |
56 |
ttctaaatttatcactagatagatattagttcatacagctcaggagtcatgatat |
110 |
Q |
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||||||| |||||||||||| |||||| ||||||||| | |||||||||||||| |
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| T |
63107 |
ttctaaaattatcactagatggatattggttcatacaacctaggagtcatgatat |
63161 |
T |
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