View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_88 (Length: 259)
Name: NF1371_low_88
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_88 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 38 - 246
Target Start/End: Original strand, 38747304 - 38747512
Alignment:
| Q |
38 |
gtaatatagcttaatccttcaatatttacacttcactccactgataatcaccattttggcaccatcttcaaaattcaacactcttctacatcagcagttc |
137 |
Q |
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| T |
38747304 |
gtaatatagcttaatccttcaatatttacacttcactccactgataatcaccattttggcaccatcttcaaaattcaacactcttctacatcagcagttc |
38747403 |
T |
|
| Q |
138 |
attaacccatccgagatcaggcgcaggacaagacaaaccattgacgtcaccaccaccaacaaccttattaaggttgtcgttatttcccaaaaacatgttc |
237 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38747404 |
attaacccatccgagatcaggggcaggacaagacaaaccattgacgtcaccaccaccaacaaccttattaaggttgtcgttatttcccaaaaacatgttc |
38747503 |
T |
|
| Q |
238 |
atattgttg |
246 |
Q |
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||||||||| |
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| T |
38747504 |
atattgttg |
38747512 |
T |
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