View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_90 (Length: 256)
Name: NF1371_low_90
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_90 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 33570698 - 33570611
Alignment:
| Q |
145 |
ctgtgtttggctgtacaaaatacaaagttcatgttttcagcccctcaaaacagatcaaaagatgaaaaaatgaagattactatttgct |
232 |
Q |
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| T |
33570698 |
ctgtgtttggctgtacaaaatacaaagttcatgttttcagcccctcaaaacagatcaaaagatgaaaaaatgaagattactatttgct |
33570611 |
T |
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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 33570803 - 33570723
Alignment:
| Q |
42 |
caagcaaatgcagtgctatacttataacaaattgaacaaatgtcggtgtaccttgaaaactaaatatcctagtcatgaacc |
122 |
Q |
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| T |
33570803 |
caagcagattcagtgctatacttattacaaattgaacaaatgtcggtgtaccttgaaaactaaatatcctagtcatgaacc |
33570723 |
T |
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