View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_92 (Length: 254)
Name: NF1371_low_92
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_92 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 2986761 - 2986871
Alignment:
| Q |
4 |
tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga |
103 |
Q |
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||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||||| |
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| T |
2986761 |
tgagtttaatgtaacatgatttatgttttgataccttaattgaaaagtgatttatcattattcaagttgtttggataatttaaatcaaaattatttttga |
2986860 |
T |
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| Q |
104 |
gtgtgaattga |
114 |
Q |
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|||||||||| |
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| T |
2986861 |
atgtgaattga |
2986871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 2928127 - 2928235
Alignment:
| Q |
4 |
tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga |
103 |
Q |
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||||||||| ||| |||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
2928127 |
tgagtttaagttaaggtgacttatgttttgataccttgattgaaaagtgatttttcataattcaagttgtttagataatttagatcaaaattacttttga |
2928226 |
T |
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| Q |
104 |
gtgtgaatt |
112 |
Q |
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||||||||| |
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| T |
2928227 |
gtgtgaatt |
2928235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 2952983 - 2953087
Alignment:
| Q |
8 |
tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt |
107 |
Q |
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| T |
2952983 |
tttaatgtatcatgatttatgtttggatatcttgattgaaaagtgatttttcataattcaagttgtttggagaatttagatcaaaattacttttaagagt |
2953082 |
T |
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| Q |
108 |
gaatt |
112 |
Q |
| |
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||||| |
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| T |
2953083 |
gaatt |
2953087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 2935663 - 2935740
Alignment:
| Q |
35 |
taccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaatt |
112 |
Q |
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|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |||||| |||||||| |
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| T |
2935663 |
taccttgattgaaaagtgatttttcataattcatgttgtttggataatttagatcaaaattgtttttgaatgtgaatt |
2935740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 2955324 - 2955373
Alignment:
| Q |
63 |
attcaagttgtttggataatttagatccaaattacttttgagtgtgaatt |
112 |
Q |
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| T |
2955324 |
attcaagttgtttggataatttagatcaaaattacttctgaatgtgaatt |
2955373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 2955220 - 2955292
Alignment:
| Q |
8 |
tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggata |
80 |
Q |
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||||||||||| | ||||||| | |||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
2955220 |
tttaatgtaacataatttatgttaggataccttaattgaaaagtgatttttcataattcaagtgttttggata |
2955292 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3002820 - 3002775
Alignment:
| Q |
1 |
aaatgagtttaatgtaacgtgatttatgatttaataccttaattga |
46 |
Q |
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| T |
3002820 |
aaatgagtttagtgtaacatgatttatgttttaataccttaattga |
3002775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 34092 - 33991
Alignment:
| Q |
8 |
tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt |
107 |
Q |
| |
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||||||||||| |||||||| || ||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
34092 |
tttaatgtaacatgatttatatttggatagcttgattgaaaagtgatttttcataattcaagttatttggataatttagatcaaaattacttttgagtgt |
33993 |
T |
|
| Q |
108 |
ga |
109 |
Q |
| |
|
|| |
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|
| T |
33992 |
ga |
33991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 43401 - 43290
Alignment:
| Q |
1 |
aaatgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttt |
100 |
Q |
| |
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|||||| |||||| ||| ||||||||| || |||| ||| |||||||| ||||||||||| |||||||||||||||||||||| |||| |||| ||||| |
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| T |
43401 |
aaatgactttaatataatatgatttatgtttgaatatcttgattgaaaaatgatttttcataattcaagttgtttggataattttgatcgaaatgacttt |
43302 |
T |
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| Q |
101 |
tgagtgtgaatt |
112 |
Q |
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| |||||||||| |
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| T |
43301 |
taagtgtgaatt |
43290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 3340056 - 3340134
Alignment:
| Q |
34 |
ataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaatt |
112 |
Q |
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||||||| |||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3340056 |
ataccttgattgaaaagtaaattttcataattcaagttgtttggataatttagattaaaattacttttgagtgtgaatt |
3340134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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