View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_97 (Length: 252)
Name: NF1371_low_97
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_97 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 52566452 - 52566687
Alignment:
| Q |
1 |
attgtctaattttgcagttgaattatagcatgttcttaattcatatttgcataagcttgattacctacatgtttgtatatacattataattaataaaagg |
100 |
Q |
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| T |
52566452 |
attgtctaattttgcagttgaattatagcatgttcttaattcatatttgcataagcttgattaactacatgtttgtatatacattataattaataaaagg |
52566551 |
T |
|
| Q |
101 |
agtattaagattttgtataatgcaggttttaagaagacctattttcagatgagaaagcaacatgactacnnnnnnnnnnnnnnnnnnnnnnctcccatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
52566552 |
agtattaagattttgtataatgcaggttttaagaaca-ctattttcagatgagaaagcaacataactac------tttttttttcttttttctcccatgt |
52566644 |
T |
|
| Q |
201 |
tctttcctgtcccatatcaatttgaaaaatatttgacctatga |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52566645 |
tctttcctgtcccatatcaatttgaaaaatatttgacctatga |
52566687 |
T |
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