View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_low_99 (Length: 251)
Name: NF1371_low_99
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9836221 - 9835981
Alignment:
| Q |
1 |
atatgaacaaaatatgaaaactggagtttcttacctgataatattttagcacgagaagatgcaacagccaatcctgggatcaaggtcttctcgtcgattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836221 |
atatgaacaaaatatgaaaactggagtttcttacctgataatattttagcacgagaagatgcaacagccaatcctgggatcaaggtcttctcgtcgattt |
9836122 |
T |
|
| Q |
101 |
caatacccaataaatcaagatctagcccagaaccgtatccaaatctttcctctgaagctgaggcctccgctcgaacagctataaaataggtcattgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836121 |
caatacccaataaatcaagatctagcccagaaccgtatccaaatctttcctctgaagctgaggcctccgctcgaacagctataaaataggtcattgaaat |
9836022 |
T |
|
| Q |
201 |
taagctatgtatatatctaaagaaaacaatttaaagtatta |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
9836021 |
taagctatgtatatatctaaagaaaacaatttaaagtatta |
9835981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9847099 - 9846859
Alignment:
| Q |
1 |
atatgaacaaaatatgaaaactggagtttcttacctgataatattttagcacgagaagatgcaacagccaatcctgggatcaaggtcttctcgtcgattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847099 |
atatgaacaaaatatgaaaactggagtttcttacctgataatattttagcacgagaagatgcaacagccaatcctgggatcaaggtcttctcgtcgattt |
9847000 |
T |
|
| Q |
101 |
caatacccaataaatcaagatctagcccagaaccgtatccaaatctttcctctgaagctgaggcctccgctcgaacagctataaaataggtcattgaaat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9846999 |
caatacccaataaatcaagatctagcccagaaccgtatccaaatctttcctctgaagctgaggcctccgctcgaacagctataaaataggtcattgaaat |
9846900 |
T |
|
| Q |
201 |
taagctatgtatatatctaaagaaaacaatttaaagtatta |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
9846899 |
taagctatgtatatatctaaagaaaacaatttaaagtatta |
9846859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 23019564 - 23019513
Alignment:
| Q |
32 |
tacctgataatattttagcacgagaagatgcaacagccaatcctgggatcaa |
83 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | ||| |||||| |
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|
| T |
23019564 |
tacctgataatattttagcacgagaagatgcaacggccagttctgtgatcaa |
23019513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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