View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372-INSERTION-10 (Length: 630)
Name: NF1372-INSERTION-10
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372-INSERTION-10 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Original strand, 45830321 - 45830754
Alignment:
| Q |
7 |
atattcatggctctgaactgtgttgagatgcttaattacttagtatcattagattttcttagaaacttcaccgaagtagcttatttcatgcctgaaccat |
106 |
Q |
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| T |
45830321 |
atattcatggctctgaactatgttgagatgcttaattacttagtatcattaaattttcttagaaacttcaccgaagtagcttatttcatgcctgaaccat |
45830420 |
T |
|
| Q |
107 |
gtgctttgaaaa--aatcatgagaagttggctaattctaaatcctacaaattactgatattgtggagttaagatttatttaaataaactcagaaattgtg |
204 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
45830421 |
gtgctttgaaaaaaaatcatgagaatttggctaattctaaatcctacaaattactgataatgtggagttaagatttatctaaataaactcagaaattgtg |
45830520 |
T |
|
| Q |
205 |
tatgagatgtgattccaaaatggatggtgtttcttgcacaaaggttcttacattttgcaacgagtatatatgttaatcctacttctttacggtgtgttct |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45830521 |
tatgagatgtgattccaaaatggatggtgtttcttgcacaaaggttcttacattttgcaacgagtatatatgttaatcctacttctttacgaggtgttct |
45830620 |
T |
|
| Q |
305 |
tcatgtttaattaagggactgtaatttttcatattgaattgagattacaaaatgtttgaatcattttttaatgtgttactgcagtttgagaatcaatgcc |
404 |
Q |
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| T |
45830621 |
tcatgtttaattaagggactgtaatttttcatattgaattgagattacaaaatttttgaatcattttttaatgtgttgctgcagttcgaggatcaatgcc |
45830720 |
T |
|
| Q |
405 |
attttgtgtttgatagatcataattcatgacgtt |
438 |
Q |
| |
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| T |
45830721 |
attttgtgtttgatagatcataattcatgacgtt |
45830754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 64 - 334
Target Start/End: Complemental strand, 48621816 - 48621542
Alignment:
| Q |
64 |
cttagaaacttcaccgaagtagcttatttcatgcctgaaccatgtgctttgaaaaaa--tcatgagaagttggctaattctaaatcctacaaa-ttactg |
160 |
Q |
| |
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|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
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| T |
48621816 |
cttagaaatttcactgaagtagctaatttcatgcctgaaccatgtgctttgaaaaaaaatcctgagaagttggctaattctaaatcctacaaaattactg |
48621717 |
T |
|
| Q |
161 |
atattgtggagttaagatttatttaaataaactcagaaattgtgtatgagatgtgattccaaaatggatggtgtttcttgcacaaaggttcttacatttt |
260 |
Q |
| |
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||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||| |
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| T |
48621716 |
atactgtggagttaagatttatctaaataaactcagaaatcatgtatgcgatgtgattctaaaatggatgatgtttcttgctcaaaggttcttacatttt |
48621617 |
T |
|
| Q |
261 |
gcaacgagtatatatgttaatcctacttctt-tacggtgtgttcttcatgtttaattaagggactgtaatttttc |
334 |
Q |
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| T |
48621616 |
gcaatgagtatatatgttaatcctacttcttgtacggggtgttcttcatgtttaattaagggactgtaatttttc |
48621542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 499 - 626
Target Start/End: Original strand, 34747906 - 34748033
Alignment:
| Q |
499 |
ggtattggagctgaaacagctagagtgttagcaaaaagaggagtgagagttgtggttggtgccagggatatgaaaaaggctctgaaagtgaaagaaaaaa |
598 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||| ||||| ||||||||| ||| || | |
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| T |
34747906 |
ggtattggagctgaaacagctagagtgttagcaaagagaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtgagagacaata |
34748005 |
T |
|
| Q |
599 |
tccaaaaggagagtccttatgctgaggt |
626 |
Q |
| |
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| T |
34748006 |
tacaaaaagagagtccaaatgctgaggt |
34748033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 48621854 - 48621812
Alignment:
| Q |
7 |
atattcatggctctgaactgtgttgagatgcttaattacttag |
49 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48621854 |
atattcatggctctgaactgtgttgagatgcttaattacttag |
48621812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 481 - 626
Target Start/End: Original strand, 43689400 - 43689545
Alignment:
| Q |
481 |
attgaaggtgccacatacggtattggagctgaaacagctagagtgttagcaaaaagaggagtgagagttgtggttggtgccagggatatgaaaaaggctc |
580 |
Q |
| |
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||||||||||| || | ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| || |||||||||||| |
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| T |
43689400 |
attgaaggtgctacttctggtattggagctgaaacggctagggtgttggcaaaaagaggagtaagagttgtggttggtgccagagacatgaaaaaggcta |
43689499 |
T |
|
| Q |
581 |
tgaaagtgaaagaaaaaatccaaaaggagagtccttatgctgaggt |
626 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43689500 |
tgaaagtgaaagaaaaaatccaagaggagagtccttatgctgaggt |
43689545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 499 - 626
Target Start/End: Complemental strand, 7970939 - 7970814
Alignment:
| Q |
499 |
ggtattggagctgaaacagctagagtgttagcaaaaagaggagtgagagttgtggttggtgccagggatatgaaaaaggctctgaaagtgaaagaaaaaa |
598 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||| ||||| |||||||| ||| || | |
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| T |
7970939 |
ggtattggagctgaaacagctagagtgttagcaaagagaggagtgagaattgtgattggtgcaagggacttgaagaaggcaatgaaagtg--agacaata |
7970842 |
T |
|
| Q |
599 |
tccaaaaggagagtccttatgctgaggt |
626 |
Q |
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| T |
7970841 |
tacaaaaagagagtccaaatgctgaggt |
7970814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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