View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1372-INSERTION-11 (Length: 715)
Name: NF1372-INSERTION-11
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1372-INSERTION-11 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 5e-95; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 302 - 700
Target Start/End: Complemental strand, 10096322 - 10095926
Alignment:
| Q |
302 |
tctagatctaagaagttacctagctcttatagggaagagatgaatgaatattgtaatagattatattagttcaaaacgatgaaattct-ttgagttaatt |
400 |
Q |
| |
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| T |
10096322 |
tctagatcttagaagtcatctagttcttatgggaaagagatgaatttataatgtaatagattatattagttcaatgcgttgaaattccgttgatcttttc |
10096223 |
T |
|
| Q |
401 |
ccaagaaaagtatagagtctacattttggagataggaaaatgcaacaaacattannnnnnnngtctctagatgaatctattttttcgagggaatggctcg |
500 |
Q |
| |
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| T |
10096222 |
cttagaaa-gtatagagtctacattatggagataggaaaatgcaactgacattatttttta--tctctagatgaaactattttt-ctagggaatggttgg |
10096127 |
T |
|
| Q |
501 |
aagaatttcatcatttgaactataacaataagccaactgtgagagagttgaacaaaaaatgcttcaacaacttgacaagaactagtacattgtaagccga |
600 |
Q |
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| T |
10096126 |
aggaatttcatcatttgaactataacaacgagccaattgtgcgaaagttgaacaaaaaatgcttcaacaacttgacaagaactagcacattgtaagccga |
10096027 |
T |
|
| Q |
601 |
cacacatcagacaaacatagatcttgttaattctcttagattgttaaacttgcttttaatttcctttttgctgtaa-tttgtttttaaactttgcacatt |
699 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
10096026 |
cacacatcagacaaacatatatcttattaattctcttagattgttgaactttcttttaatttcctttttgctgtaattttctttttaaaatttgcacatt |
10095927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 302 - 715
Target Start/End: Complemental strand, 10079669 - 10079258
Alignment:
| Q |
302 |
tctagatctaagaagttacctagctcttatagggaagagatgaatgaatattgtaatagattatattagttcaaaacgatgaaattctttgagttaattc |
401 |
Q |
| |
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||||||||| |||||| ||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||| ||||||||||| || | || |
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| T |
10079669 |
tctagatcttagaagtcacctaactcttatgggaaagagatgaatttatattgtaatagattatattagttcaatgcgatgaaattccttcgatcctatc |
10079570 |
T |
|
| Q |
402 |
caagaaaagtatagagtctacattttggagataggaaaatgcaacaaacattannnnnnnngtctctagatgaatctattttttcgagggaatggctcga |
501 |
Q |
| |
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| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||||| ||||| |||||||||| | | | || | |
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| T |
10079569 |
cttaaaaagtatagagtctacattatggagataagaaaatgcaacgggcattatttttta--tctctaaatgaaactattttttc-acgaagaggatgtg |
10079473 |
T |
|
| Q |
502 |
agaatttcatcatttgaactataacaataagccaactgtgagagagttgaacaaaaaatgcttcaacaacttgacaagaactagtacattgtaagccgac |
601 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||| |
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| T |
10079472 |
ggaatttcatcatttgaactataacaacgagccaaccgcgcgagagttgaacaaaaaatgcttcaacaacttgacgagaactagcacattgtaagttgac |
10079373 |
T |
|
| Q |
602 |
acacatcagacaaacatagatcttgttaattctcttagattgttaaacttgcttttaatttcctttttgctgtaa-tttgtttttaaactttgcacatta |
700 |
Q |
| |
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|||||| ||||||||||| ||||| | ||||||||||||||||| || || |||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
10079372 |
acacattagacaaacatatatcttttcaattctcttagattgttgaattttcttttaatttcctttttgctgtaattttctttttaaactttgcacatta |
10079273 |
T |
|
| Q |
701 |
tcttgatatcttgat |
715 |
Q |
| |
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||||||||||||||| |
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| T |
10079272 |
tcttgatatcttgat |
10079258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 305 - 700
Target Start/End: Complemental strand, 10083881 - 10083486
Alignment:
| Q |
305 |
agatctaagaagttacctagctcttatagggaagagatgaatgaatattgtaatagattatattagttcaaaacgatgaaatt-ctttgagttaattcca |
403 |
Q |
| |
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|||||| ||||||||| |||||| |||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||| | | | | |
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| T |
10083881 |
agatcttagaagttacatagctcgtatatggaagagataaatttatattgtaatagattatattagttcaatgcgatgaaatttcttccatcttgtcctt |
10083782 |
T |
|
| Q |
404 |
agaaaagtatagagtctacattttggagataggaaaatgcaacaaacattannnnnnnngtctctagatgaatctattttttcgagggaatggctcgaag |
503 |
Q |
| |
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||| | |||||||||||||||| |||||||||||||||||||| ||||| |||||| |||| |||||||| | ||| || || | | | |
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| T |
10083781 |
agaga-gtatagagtctacattatggagataggaaaatgcaacgggcattattttttttatctctaattgaaactattttt-ctaggaaaaggatggggg |
10083684 |
T |
|
| Q |
504 |
aatttcatcatttgaactataacaataagccaactgtgagagagttgaacaaaaaatgcttcaacaacttgacaagaactagtacattgtaagccgacac |
603 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||| ||| |||||||| |||||||||||||| || |
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| T |
10083683 |
aatttcatcctttgaactataacaacgagccaactgtgcgaaaattgaacaaaaaatgcttcaacaactcgacgagaactagcacattgtaagccgatac |
10083584 |
T |
|
| Q |
604 |
acatcagacaaacatagatcttgttaattctcttagattgttaaacttgcttttaatttcctttttgctgtaa-tttgtttttaaactttgcacatta |
700 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||| ||| |||||||| |||| |||||| |
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| T |
10083583 |
acatcagacaaacatatatcttgttatttctcttagattgttgaactttcttttaatttcctttttgctataattttctttttaaaatttgaacatta |
10083486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 10079754 - 10079658
Alignment:
| Q |
186 |
tgtacaaaaaagaaactattcctataatgaaaatcatccaaaaatgctcgtaaacactcatacaccctaaaacaagttatcattctctagatcttag |
282 |
Q |
| |
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|||||||||| ||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||| || ||||||||| | ||||||||||||||| |
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| T |
10079754 |
tgtacaaaaatgaaaccatttctataatgaaattcatccaaaaatgctcataaacactcatacactctcaaacaagttcccgttctctagatcttag |
10079658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 10096405 - 10096311
Alignment:
| Q |
186 |
tgtacaaaaaagaaactattcctataatgaaaatcatccaaaaatgctcgtaaacactcatacaccctaaaacaagttatcattctctagatcttag |
282 |
Q |
| |
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|||||||||||||||| ||||||||||||||| || ||||||| ||||| ||||| ||||||||| || ||||||||| |||||||||||||||||| |
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| T |
10096405 |
tgtacaaaaaagaaaccattcctataatgaaattc-tccaaaa-tgctcataaaccctcatacactctcaaacaagttctcattctctagatcttag |
10096311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 10103780 - 10103697
Alignment:
| Q |
303 |
ctagatctaagaagttacctagctcttatagggaagagatgaatgaatattgtaatagattatattagttcaaaacgatgaaatt |
387 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
10103780 |
ctagatcttggaagttacgtagctcttatggggaagagatgaattaatattgt-atagattatattagttcaaagcgatgaaatt |
10103697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 444
Target Start/End: Complemental strand, 10090326 - 10090184
Alignment:
| Q |
301 |
atctagatctaagaagttacctagctcttatagggaagagatgaatgaatattgtaatagattatatta-gttcaaaacgatgaaattctttgagttaat |
399 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| |||||| ||||| | | || |||||||| ||||||| ||||||||||| || || || | |
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| T |
10090326 |
atctagatcttggaagttacctagctcttatggggaagatatgaatcaatat--ttacaggttatattaggttcaaagcgatgaaattccttcagctact |
10090229 |
T |
|
| Q |
400 |
tccaagaaaagtatagagtctacattttggagataggaaaatgca |
444 |
Q |
| |
|
| | || || ||||||| |||||||| ||||||| |||||||| |
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|
| T |
10090228 |
ttctggacaaaaatagagtttacatttttgagatagaaaaatgca |
10090184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 388
Target Start/End: Complemental strand, 10072304 - 10072217
Alignment:
| Q |
302 |
tctagatctaagaagttacctagctcttatagggaagagatgaatgaatattgta-atagattatattagttcaaaacgatgaaattc |
388 |
Q |
| |
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||||||||| ||| ||||||||||||||| | |||| |||||| |||||| | |||||| |||||||||||||||||||||||| |
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| T |
10072304 |
tctagatctcggaatttacctagctcttatgagaaagacatgaattaatattttgtatagatattattagttcaaaacgatgaaattc |
10072217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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