View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1372-INSERTION-14 (Length: 819)

Name: NF1372-INSERTION-14
Description: NF1372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1372-INSERTION-14
NF1372-INSERTION-14
[»] chr8 (10 HSPs)
chr8 (552-819)||(27309783-27310045)
chr8 (421-575)||(12750154-12750309)
chr8 (462-515)||(43846291-43846344)
chr8 (421-556)||(34362988-34363123)
chr8 (421-488)||(22842147-22842215)
chr8 (427-490)||(33102104-33102168)
chr8 (462-517)||(34072904-34072959)
chr8 (425-487)||(35690591-35690654)
chr8 (462-552)||(157516-157606)
chr8 (475-552)||(5995150-5995227)
[»] chr5 (10 HSPs)
chr5 (427-575)||(37442522-37442670)
chr5 (421-573)||(9828179-9828330)
chr5 (421-515)||(32303607-32303702)
chr5 (444-547)||(32827017-32827120)
chr5 (418-515)||(8254694-8254791)
chr5 (427-574)||(42923876-42924024)
chr5 (445-531)||(36781027-36781114)
chr5 (472-517)||(28217976-28218021)
chr5 (472-517)||(28228830-28228875)
chr5 (476-517)||(28228862-28228903)
[»] chr7 (6 HSPs)
chr7 (427-515)||(41909334-41909422)
chr7 (427-530)||(3756380-3756484)
chr7 (442-486)||(41340986-41341030)
chr7 (429-536)||(31756809-31756919)
chr7 (423-482)||(10084613-10084672)
chr7 (534-589)||(31195636-31195691)
[»] chr1 (8 HSPs)
chr1 (470-574)||(622857-622961)
chr1 (445-572)||(14210626-14210753)
chr1 (496-552)||(6960014-6960070)
chr1 (425-515)||(21322543-21322634)
chr1 (475-521)||(3393030-3393076)
chr1 (462-523)||(3851745-3851804)
chr1 (442-499)||(52186902-52186960)
chr1 (470-571)||(31847645-31847746)
[»] scaffold0254 (1 HSPs)
scaffold0254 (427-554)||(23196-23323)
[»] chr6 (9 HSPs)
chr6 (427-554)||(2146735-2146862)
chr6 (427-572)||(3606968-3607113)
chr6 (420-575)||(30841105-30841259)
chr6 (462-575)||(28992380-28992493)
chr6 (425-490)||(2725843-2725909)
chr6 (425-517)||(3644736-3644829)
chr6 (462-531)||(3788926-3788995)
chr6 (419-566)||(6566840-6566988)
chr6 (496-566)||(6575141-6575212)
[»] chr4 (17 HSPs)
chr4 (452-572)||(30211934-30212054)
chr4 (444-490)||(30097447-30097493)
chr4 (462-515)||(53979055-53979108)
chr4 (470-519)||(56369521-56369570)
chr4 (505-572)||(43635757-43635824)
chr4 (421-515)||(959081-959175)
chr4 (427-557)||(50136474-50136604)
chr4 (473-574)||(36138985-36139086)
chr4 (421-513)||(52450149-52450242)
chr4 (473-552)||(7095578-7095657)
chr4 (462-517)||(16962859-16962914)
chr4 (430-516)||(33648207-33648294)
chr4 (420-486)||(8434236-8434302)
chr4 (469-531)||(37182222-37182284)
chr4 (466-552)||(42096740-42096826)
chr4 (445-514)||(45800248-45800318)
chr4 (427-515)||(56210956-56211043)
[»] chr3 (8 HSPs)
chr3 (430-574)||(52204671-52204815)
chr3 (502-574)||(36703049-36703121)
chr3 (474-517)||(18360111-18360154)
chr3 (502-589)||(9144153-9144240)
chr3 (430-515)||(36703076-36703162)
chr3 (462-515)||(20991593-20991646)
chr3 (422-515)||(33486894-33486987)
chr3 (462-515)||(35310404-35310457)
[»] chr2 (11 HSPs)
chr2 (442-531)||(17793893-17793982)
chr2 (421-574)||(33833366-33833519)
chr2 (430-574)||(43294567-43294710)
chr2 (425-515)||(44540663-44540754)
chr2 (462-556)||(17793993-17794087)
chr2 (420-557)||(39555951-39556087)
chr2 (425-515)||(6620006-6620097)
chr2 (427-531)||(32016436-32016542)
chr2 (462-515)||(13387358-13387411)
chr2 (471-515)||(44069891-44069935)
chr2 (505-575)||(8514003-8514073)
[»] scaffold0004 (1 HSPs)
scaffold0004 (504-574)||(130688-130758)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 552 - 819
Target Start/End: Original strand, 27309783 - 27310045
Alignment:
Q  552 taggacggaaatgaggaaaaacaggtgaaagaaaagcagtaattctccaatccaatttgacggaccacgagcaatcccactagctaacaatttcataata 651  Q
    |||||||||||||||||||||||| || ||||||||||   ||| | |||| ||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  27309783 taggacggaaatgaggaaaaacagatggaagaaaagca---atttttcaattcaattcgacggaccacgagcaatcctattagctaacaatttcataata 27309879  T
Q  652 agtcaaagtcgatacatgtttgctttggatgaaatgaataatgttaggatactgccctgtttggcatcaatatactaaattac---nnnnnnnnnncact 748  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||||| |||| |||||||||||||||||| |||||             ||||    
T  27309880 agtcaaagtcgatacatgtttgctttgg-----atgaataatgttaggatactaccctatttggcatcaatatactatattactttctttttttttcact 27309974  T
Q  749 cttttttgaaaaagaaggtcagaagaagaaaatattcaatatcaatgtcaaatccaccgttcactaatatc 819  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||| |||||||||    
T  27309975 cttttttgaaaaagaaggtcaaaagaagaaaacattcaatatcaatgtcaaatcaaacgtttactaatatc 27310045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 421 - 575
Target Start/End: Original strand, 12750154 - 12750309
Alignment:
Q  421 gataactgctcttctctcatgtgttttttctcatttccatc-aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatg 519  Q
    ||||| |||||||||| ||| ||||||| |||||  || || |||||| |||||||||||||||||||||| || ||||||||| | || |||||||| |    
T  12750154 gataattgctcttctcccatctgtttttcctcatccccgtccaaatagccgagcgtgagttaactcacgcaggtgtattttcagtgcgaattaacttacg 12750253  T
Q  520 taggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaacag 575  Q
    || |  |||||| |||  ||| ||||||||||||||  || |||||| ||||||||    
T  12750254 taagcgtatttttcagcttgagttaactcacgtagggtgggaatgagcaaaaacag 12750309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 515
Target Start/End: Original strand, 43846291 - 43846344
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||    
T  43846291 aaatagtcgagcgtgagttaactcacgcatgtatattctcagcaagagttaact 43846344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 421 - 556
Target Start/End: Complemental strand, 34363123 - 34362988
Alignment:
Q  421 gataactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgt 520  Q
    ||||| ||||||||   ||| |||||||  ||||||| ||||||||| ||||| | |||||||| |||||  | |||||| | |||||||||||||| |     
T  34363123 gataattgctcttcatccatctgtttttgttcatttctatcaaatagccgagcttaagttaacttacgcagatgtatttttaacgtgagttaacttacgc 34363024  T
Q  521 aggtatattttccagtgtgaattaactcacgtagga 556  Q
    || |||||||| || ||||| ||||||||| |||||    
T  34363023 agatatatttttcaatgtgagttaactcacatagga 34362988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 488
Target Start/End: Original strand, 22842147 - 22842215
Alignment:
Q  421 gataactgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacg 488  Q
    ||||| || ||||||| ||| |||||||||||||| || ||||| ||||||||||||||||||||||||    
T  22842147 gataattgttcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaactcacg 22842215  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 490
Target Start/End: Complemental strand, 33102168 - 33102104
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgca 490  Q
    ||||||||||| || ||||||| |||||| || ||||| ||| ||||||||||||||||||||||    
T  33102168 tgctcttctcttatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcacgca 33102104  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 517
Target Start/End: Complemental strand, 34072959 - 34072904
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaactta 517  Q
    |||||| ||||| |||||||||||||| | || |||| ||||||||||||||||||    
T  34072959 aaataggcgagcatgagttaactcacgtaggtgtattctcagcgtgagttaactta 34072904  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 487
Target Start/End: Complemental strand, 35690654 - 35690591
Alignment:
Q  425 actgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcac 487  Q
    |||| ||||||||||| ||||||| ||||||  ||||||| ||||||||||||| |||||||||    
T  35690654 actgttcttctctcatatgtttttgctcattctcatcaaaatagtcgagcgtgaattaactcac 35690591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 462 - 552
Target Start/End: Complemental strand, 157606 - 157516
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgt 552  Q
    ||||||| || ||||| |||||||||||||||  |||||||   |||||||| | | |||||| |||||| ||| |||| |||||||||||    
T  157606 aaatagtggaacgtgaattaactcacgcatgtgcattttcaatatgagttaattcacgtaggtgtatttttcagcgtgagttaactcacgt 157516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 475 - 552
Target Start/End: Original strand, 5995150 - 5995227
Alignment:
Q  475 tgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgt 552  Q
    ||||||||||||||||||| |||||||  ||||||||||||    || || |||||| ||| |||| |||||||||||    
T  5995150 tgagttaactcacgcatgtgtattttcgacgtgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgt 5995227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 427 - 575
Target Start/End: Complemental strand, 37442670 - 37442522
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtat 526  Q
    |||||||||  ||| ||||||| |||||| || |||||||| |||||||||||||||||| |||  | |||||||| | |||||||||| | |||||| |    
T  37442670 tgctcttcttccatctgtttttgctcattcccgtcaaatagccgagcgtgagttaactcatgcagatgtattttcaacatgagttaactcacgtaggtgt 37442571  T
Q  527 attttccagtgtgaattaactcacgtaggacggaaatgaggaaaaacag 575  Q
    ||||| ||| |||| |||||||| ||||||||| |||||| ||||||||    
T  37442570 atttttcagcgtgagttaactcatgtaggacgggaatgagcaaaaacag 37442522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 421 - 573
Target Start/End: Original strand, 9828179 - 9828330
Alignment:
Q  421 gataactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgt 520  Q
    ||||| |||||||||| ||| || |||| |||||| || ||||||||| |||||||||||||| ||| || || |||||||||  |||||||||| | ||    
T  9828179 gataattgctcttctcccatctggttttgctcattcccgtcaaatagtagagcgtgagttaacccacacaagtgtattttcag-atgagttaactcacgt 9828277  T
Q  521 aggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaac 573  Q
    |||| |||||| ||| |||| |||| ||||||||  |||||||||| ||||||    
T  9828278 aggtgtatttttcagcgtgagttaaatcacgtagagcggaaatgagcaaaaac 9828330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 421 - 515
Target Start/End: Original strand, 32303607 - 32303702
Alignment:
Q  421 gataactgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    ||||| |||||||||  ||| || |||| ||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32303607 gataattgctcttcttccatctgattttgctcattttcgtcaaaatagtcgagcgtgagttaactcacgcatgtgtattttcagcgtgagttaact 32303702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 444 - 547
Target Start/End: Complemental strand, 32827120 - 32827017
Alignment:
Q  444 ttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaatt 543  Q
    ||||| ||||||||| |||||||||||| | ||||||||||||| || || |||||||| ||||||  |||| |||||||| |||||| ||| |||| ||    
T  32827120 tttttgctcatttccgtcaaatagtcgaacatgagttaactcacacaagtgtattttcaacgtgagaaaactcatgtaggtgtatttttcagcgtgagtt 32827021  T
Q  544 aact 547  Q
    ||||    
T  32827020 aact 32827017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 418 - 515
Target Start/End: Original strand, 8254694 - 8254791
Alignment:
Q  418 aatgataactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||||| |||||||||| ||| ||||||| ||| ||||| | ||| || ||| ||| | |||||||||||||||  |||||||| |||||||||||    
T  8254694 aatgataattgctcttctcccatatgtttttactcgtttccgtaaaaaagccgaacgtaaattaactcacgcatgtgcattttcagtgtgagttaact 8254791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 574
Target Start/End: Complemental strand, 42924024 - 42923876
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggta 525  Q
    |||||||||| ||| ||||||| ||| || || ||||| ||  ||| |||| ||||||||| ||| ||  ||||||| |||||||||||| ||| | |||    
T  42924024 tgctcttctcacatatgtttttactcgttcccttcaaaataaccgaacgtgtgttaactcatgcaggtgcattttcaacgtgagttaactcatgcatgta 42923925  T
Q  526 tattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaaca 574  Q
    |||||| ||| |||  |||||||| || | |||| |||||| |||||||    
T  42923924 tatttttcagcgtgggttaactcatgttgaacgggaatgagcaaaaaca 42923876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 531
Target Start/End: Complemental strand, 36781114 - 36781027
Alignment:
Q  445 tttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatatttt 531  Q
    |||||||||||||| ||||| |||||||| || |||||| ||||| |  |||||| |||||||||||||| | | ||| |||||||||    
T  36781114 tttttctcatttccgtcaaaatagtcgagtgtcagttaattcacgtaaatatattctcagcgtgagttaattcacgtatgtatatttt 36781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 517
Target Start/End: Original strand, 28217976 - 28218021
Alignment:
Q  472 gcgtgagttaactcacgcatgtatattttcagcgtgagttaactta 517  Q
    ||||||||||||||||||| || |||| ||| ||||||||||||||    
T  28217976 gcgtgagttaactcacgcaggtgtattctcatcgtgagttaactta 28218021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 517
Target Start/End: Complemental strand, 28228875 - 28228830
Alignment:
Q  472 gcgtgagttaactcacgcatgtatattttcagcgtgagttaactta 517  Q
    |||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  28228875 gcgtgagttaactcgcgcatgtgtattctcatcgtgagttaactta 28228830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 517
Target Start/End: Original strand, 28228862 - 28228903
Alignment:
Q  476 gagttaactcacgcatgtatattttcagcgtgagttaactta 517  Q
    |||||||||||||||||| |||| ||| ||||||||||||||    
T  28228862 gagttaactcacgcatgtgtattctcatcgtgagttaactta 28228903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 41909422 - 41909334
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||||||||||| |||||||||||||| || ||||||| || ||||| |||||||||||||||||||||||||| ||| ||||||||    
T  41909422 tgctcttctctcatctgttttttctcattcccgtcaaataatcaagcgtaagttaactcacgcatgtatattttcaacgtaagttaact 41909334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 427 - 530
Target Start/End: Original strand, 3756380 - 3756484
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggta 525  Q
    |||||||||| ||| ||||||| |||||| || ||||| |||||||| ||||||||||||  ||| ||  ||| |||||||||||||||| ||||||||     
T  3756380 tgctcttctcccatttgtttttgctcattcccgtcaaaatagtcgagtgtgagttaactcgtgcaagtggattctcagcgtgagttaactcatgtaggtg 3756479  T
Q  526 tattt 530  Q
    |||||    
T  3756480 tattt 3756484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 41341030 - 41340986
Alignment:
Q  442 tgttttttctcatttccatcaaatagtcgagcgtgagttaactca 486  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  41341030 tgttttttctcatttccatcaaatagttgaacgtgagttaactca 41340986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 429 - 536
Target Start/End: Complemental strand, 31756919 - 31756809
Alignment:
Q  429 ctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtga--gttaactcacgcatgtatattttcagcgtgagttaacttatgtaggta 525  Q
    |||||||| ||| ||||||| ||||||||| | ||| |||| ||| ||||  |||||||||||||  |||||| |||||||||||||||| ||| ||||     
T  31756919 ctcttctcccatctgtttttgctcatttccgtaaaaatagttgagtgtgatagttaactcacgcagatatattctcagcgtgagttaactcatgcaggtg 31756820  T
Q  526 tattttccagt 536  Q
    |||||| ||||    
T  31756819 tatttttcagt 31756809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 10084613 - 10084672
Alignment:
Q  423 taactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaa 482  Q
    |||| ||||||||||||| ||||||| |||||| || |||||||| | ||||||||||||    
T  10084613 taaccgctcttctctcatctgtttttgctcattcccgtcaaatagccaagcgtgagttaa 10084672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 589
Target Start/End: Original strand, 31195636 - 31195691
Alignment:
Q  534 agtgtgaattaactcacgtaggacggaaatgaggaaaaacaggtgaaagaaaagca 589  Q
    ||||||||||||||| ||| | ||||||||||| |||||||| |||||||| ||||    
T  31195636 agtgtgaattaactcgcgttgaacggaaatgagtaaaaacagatgaaagaagagca 31195691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 470 - 574
Target Start/End: Complemental strand, 622961 - 622857
Alignment:
Q  470 gagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaa 569  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||||| | |||||| |||||| ||  |||| |||||||||||||||||| |||||| ||    
T  622961 gagcctgagttaactcgcgcatgtgtattttcagcgtgagttaactcacgtaggtgtatttttcaacgtgagttaactcacgtaggacgggaatgagcaa 622862  T
Q  570 aaaca 574  Q
    |||||    
T  622861 aaaca 622857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 445 - 572
Target Start/End: Original strand, 14210626 - 14210753
Alignment:
Q  445 tttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaatta 544  Q
    |||| |||||| || ||||||||||||| ||||||||||  |||||  |  ||||||| |||||||||||| |  ||||| |||||| ||| |||| |||    
T  14210626 ttttgctcattcccgtcaaatagtcgagtgtgagttaacaaacgcagatgcattttcaacgtgagttaactcacataggtgtatttttcagcgtgagtta 14210725  T
Q  545 actcacgtaggacggaaatgaggaaaaa 572  Q
     |||||||| || || |||||| |||||    
T  14210726 tctcacgtaagatgggaatgagcaaaaa 14210753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 552
Target Start/End: Complemental strand, 6960070 - 6960014
Alignment:
Q  496 attttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgt 552  Q
    ||||||| |||||||||||||| |||||| |||||| |||||||| |||||| ||||    
T  6960070 attttcaacgtgagttaacttacgtaggtgtatttttcagtgtgagttaacttacgt 6960014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 515
Target Start/End: Complemental strand, 21322634 - 21322543
Alignment:
Q  425 actgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||||||||| ||| ||||||| |||| | || ||||| ||| |||| ||||||||||||||||| || |||| ||| ||| ||||||||    
T  21322634 actgctcttctcccatctgtttttgctcaatcccgtcaaaatagccgagggtgagttaactcacgcaggtgtattctcaacgtaagttaact 21322543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 475 - 521
Target Start/End: Original strand, 3393030 - 3393076
Alignment:
Q  475 tgagttaactcacgcatgtatattttcagcgtgagttaacttatgta 521  Q
    |||||||||||||| | || ||||||||||||||||||||| |||||    
T  3393030 tgagttaactcacgtaggtgtattttcagcgtgagttaactcatgta 3393076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 462 - 523
Target Start/End: Original strand, 3851745 - 3851804
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtagg 523  Q
    |||||| |||||||||||||||||  ||| || ||||||||| ||||||||||| |||||||    
T  3851745 aaatagccgagcgtgagttaactc--gcaagtgtattttcagtgtgagttaactcatgtagg 3851804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 442 - 499
Target Start/End: Complemental strand, 52186960 - 52186902
Alignment:
Q  442 tgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattt 499  Q
    ||||||| |||| |||||||||| ||| |||||||||||||||||||||| || |||||    
T  52186960 tgtttttgctcacttccatcaaaatagccgagcgtgagttaactcacgcaggtgtattt 52186902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 571
Target Start/End: Complemental strand, 31847746 - 31847645
Alignment:
Q  470 gagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaa 569  Q
    |||| |||||||||||||||| ||  ||||| | |||||||||||| |  ||| | |||||| || ||||| |||||||| || ||||| ||||||| ||    
T  31847746 gagcatgagttaactcacgcaagtgcatttttaccgtgagttaactcacatagatgtatttttcactgtgagttaactcatgttggacgaaaatgagtaa 31847647  T
Q  570 aa 571  Q
    ||    
T  31847646 aa 31847645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 427 - 554
Target Start/End: Original strand, 23196 - 23323
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtat 526  Q
    |||||||||| ||| | ||||| || |||||| ||||||||  |||||||||| ||||||||||||| || ||||| |||||||||||||| |||||| |    
T  23196 tgctcttctcccatctatttttgcttatttccgtcaaatagcagagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaacttacgtaggtgt 23295  T
Q  527 attttccagtgtgaattaactcacgtag 554  Q
     |||| ||  ||||||||||||||||||    
T  23296 gtttttcaacgtgaattaactcacgtag 23323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 9e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 427 - 554
Target Start/End: Original strand, 2146735 - 2146862
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtat 526  Q
    |||||||||| ||| | ||||| || |||||| ||||||||  |||||||||| ||||||||||||| || ||||| |||||||||||||| |||||| |    
T  2146735 tgctcttctcccatctatttttgcttatttccgtcaaatagcagagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaacttacgtaggtgt 2146834  T
Q  527 attttccagtgtgaattaactcacgtag 554  Q
     |||| ||  ||||||||||||||||||    
T  2146835 gtttttcaacgtgaattaactcacgtag 2146862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 427 - 572
Target Start/End: Complemental strand, 3607113 - 3606968
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtat 526  Q
    |||||||||| ||| | ||||| ||||||| | | ||||||| |||||||| || |||||||||||| |||||| | |||||||||||| | |||||| |    
T  3607113 tgctcttctcccatctatttttgctcattttcgtaaaatagttgagcgtgaattgactcacgcatgtgtatttttaacgtgagttaactcacgtaggtgt 3607014  T
Q  527 attttccagtgtgaattaactcacgtaggacggaaatgaggaaaaa 572  Q
    ||||||||| || | |||||||| ||||   ||||||||| |||||    
T  3607013 attttccagcgtaagttaactcatgtagagtggaaatgagcaaaaa 3606968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 420 - 575
Target Start/End: Original strand, 30841105 - 30841259
Alignment:
Q  420 tgataactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatg 519  Q
    ||||||||| |||||||  || ||||||| ||||||||| ||||||||||||| ||||| |||||||| ||||  |||||||||  |||||||||||||     
T  30841105 tgataactgttcttctcctatctgtttttactcatttccgtcaaatagtcgagtgtgagctaactcacacatgcgtattttcagtatgagttaacttata 30841204  T
Q  520 taggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaacag 575  Q
     |  | |||||| |||| ||| ||||||||||||| || | ||| || ||||||||    
T  30841205 ca-ttgtatttttcagtatgagttaactcacgtagaacaggaataagcaaaaacag 30841259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 462 - 575
Target Start/End: Complemental strand, 28992493 - 28992380
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtaggacggaa 561  Q
    |||||| ||| ||||| ||||||||| ||||| ||||||||||||||||||||| | ||| || |||||| ||| |||| |||||||||||||   || |    
T  28992493 aaatagacgatcgtgatttaactcacacatgtgtattttcagcgtgagttaactcacgtatgtgtatttttcagcgtgagttaactcacgtagagaggga 28992394  T
Q  562 atgaggaaaaacag 575  Q
    ||||| ||||||||    
T  28992393 atgagtaaaaacag 28992380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 2725909 - 2725843
Alignment:
Q  425 actgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgca 490  Q
    |||||||||||| ||| ||||||| |||||| || ||||| ||| ||||||||||||||||||||||    
T  2725909 actgctcttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaactcacgca 2725843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 517
Target Start/End: Original strand, 3644736 - 3644829
Alignment:
Q  425 actgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaactta 517  Q
    |||||||||||||||| | ||||| ||||||  | ||||| ||||  |||||||||||||| | ||| || ||||||||| |||||||||||||    
T  3644736 actgctcttctctcatctatttttgctcattctcgtcaaaatagttaagcgtgagttaacttatgcaggtgtattttcagtgtgagttaactta 3644829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 531
Target Start/End: Complemental strand, 3788995 - 3788926
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatatttt 531  Q
    |||||| ||||| | |||||||| ||||| | |||||||||| ||||||||||||| |||||| ||||||    
T  3788995 aaatagccgagcataagttaacttacgcaagaatattttcagtgtgagttaacttacgtaggtgtatttt 3788926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 566
Target Start/End: Complemental strand, 6566988 - 6566840
Alignment:
Q  419 atgataactgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaactta 517  Q
    ||||||| |||||||||| ||| | ||||| ||| ||||||| ||| |||||||  ||||||||| ||||||   || ||||||| ||| | |||||| |    
T  6566988 atgataattgctcttctc-catatatttttgctcgtttccattaaaatagtcgaatgtgagttaagtcacgctgataaattttcaacgtaaattaactca 6566890  T
Q  518 tgtaggtata-ttttccagtgtgaattaactcacgtaggacggaaatgag 566  Q
    |||| ||||| ||||  ||||||| ||||||||||| |||||| ||||||    
T  6566889 tgtatgtatagttttttagtgtgagttaactcacgttggacgggaatgag 6566840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 566
Target Start/End: Complemental strand, 6575212 - 6575141
Alignment:
Q  496 attttcagcgtgagttaacttatgtaggtatatttt-ccagtgtgaattaactcacgtaggacggaaatgag 566  Q
    ||||||| ||| |||||||||| |||||||||||||   ||||||| ||||||||||| |||||| ||||||    
T  6575212 attttcaacgtaagttaacttacgtaggtatattttattagtgtgagttaactcacgttggacgggaatgag 6575141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 452 - 572
Target Start/End: Original strand, 30211934 - 30212054
Alignment:
Q  452 catttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacg 551  Q
    |||||| || |||||  ||||| ||||||||||||| |||||  ||||||| |||||||||||| | ||||||  |||||||||||||| ||||||||||    
T  30211934 catttcaataaaataaccgagcatgagttaactcacacatgtgcattttcaacgtgagttaactcacgtaggtgcattttccagtgtgagttaactcacg 30212033  T
Q  552 taggacggaaatgaggaaaaa 572  Q
    | ||| || |||||| |||||    
T  30212034 ttggatgggaatgagaaaaaa 30212054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 444 - 490
Target Start/End: Original strand, 30097447 - 30097493
Alignment:
Q  444 ttttttctcatttccatcaaatagtcgagcgtgagttaactcacgca 490  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  30097447 tttttgctcatttccatcaaatagtcgagcgtgagttaactcacgca 30097493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 515
Target Start/End: Original strand, 53979055 - 53979108
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  53979055 aaatagtcgaacgtgagttaactcacacatgtgtattttcagcgtgagttaact 53979108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 470 - 519
Target Start/End: Complemental strand, 56369570 - 56369521
Alignment:
Q  470 gagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatg 519  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  56369570 gagcgtgagttaactcacgcatgtatattttcagcgtgatttaatttatg 56369521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 43635824 - 43635757
Alignment:
Q  505 gtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaa 572  Q
    |||||||||||||  ||||| |||||||||| |||| |||||||| |||||||||||||||| |||||    
T  43635824 gtgagttaacttaaataggtgtattttccagcgtgagttaactcatgtaggacggaaatgagcaaaaa 43635757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 421 - 515
Target Start/End: Original strand, 959081 - 959175
Alignment:
Q  421 gataactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    ||||| |||||||||| ||| | ||||| ||||||||| | ||||| |||||||| |||||||| | ||| || |||||||||||| ||||||||    
T  959081 gataattgctcttctcccatctatttttgctcatttccgttaaataatcgagcgtcagttaactgatgcaggtgtattttcagcgtaagttaact 959175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 557
Target Start/End: Original strand, 50136474 - 50136604
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtat 526  Q
    |||||||||| |||   ||||| |||||| || |||||||| ||||||| ||||| |   |||| || |||||||||  |||||||||| |  ||||| |    
T  50136474 tgctcttctcccattaatttttgctcattcccgtcaaatagccgagcgtaagttatcatgcgcaggtgtattttcagtttgagttaactcacataggtgt 50136573  T
Q  527 attttccagtgtgaattaactcacgtaggac 557  Q
    ||||| |||||||| ||||||||||||||||    
T  50136574 atttttcagtgtgagttaactcacgtaggac 50136604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 473 - 574
Target Start/End: Original strand, 36138985 - 36139086
Alignment:
Q  473 cgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaa 572  Q
    |||||||||||||||||||||  ||||||| |||||||||||| ||||| ||  ||||| ||| |||| |||||||| || ||| |  |||||| |||||    
T  36138985 cgtgagttaactcacgcatgtgcattttcaacgtgagttaactcatgtatgtgaatttttcagcgtgagttaactcatgttggatgagaatgagcaaaaa 36139084  T
Q  573 ca 574  Q
    ||    
T  36139085 ca 36139086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 513
Target Start/End: Complemental strand, 52450242 - 52450149
Alignment:
Q  421 gataactgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaa 513  Q
    ||||| |||| | ||| ||| ||||||| |||||| || ||||| ||| |||||||||||||||||| |||  |||||||||| ||||||||||    
T  52450242 gataattgctttcctcccatctgtttttactcattcccgtcaaaatagccgagcgtgagttaactcaagcagttatattttcaacgtgagttaa 52450149  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 7095657 - 7095578
Alignment:
Q  473 cgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgt 552  Q
    |||||||||||||||||| || ||||||||  || |||||||| |  || || |||||| |||||||| |||||||||||    
T  7095657 cgtgagttaactcacgcaagtgtattttcaatgtaagttaactcacataagtgtatttttcagtgtgagttaactcacgt 7095578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 517
Target Start/End: Original strand, 16962859 - 16962914
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaactta 517  Q
    ||||||||||||||||||||||||||| |  | ||||||||| ||||||| |||||    
T  16962859 aaatagtcgagcgtgagttaactcacgtagatgtattttcagtgtgagttgactta 16962914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 516
Target Start/End: Original strand, 33648207 - 33648294
Alignment:
Q  430 tcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaactt 516  Q
    ||||||| ||| | ||||| |||||| || ||||| |||||||| ||||||||||| |||||  | |||| |||||||||||||||||    
T  33648207 tcttctcccatatatttttgctcattcccgtcaaaatagtcgagtgtgagttaactaacgcagatgtattctcagcgtgagttaactt 33648294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 8434302 - 8434236
Alignment:
Q  420 tgataactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactca 486  Q
    |||||| |||||||||||||| | ||||| ||||||||  |||||||  |||||||| |||||||||    
T  8434302 tgataattgctcttctctcatctttttttgctcatttctgtcaaataaccgagcgtgcgttaactca 8434236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 469 - 531
Target Start/End: Complemental strand, 37182284 - 37182222
Alignment:
Q  469 cgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatatttt 531  Q
    ||||||| ||||||||||| |||||  ||||||| |||||||||||| | |||||| ||||||    
T  37182284 cgagcgtaagttaactcacacatgtgcattttcaacgtgagttaactcacgtaggtgtatttt 37182222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 466 - 552
Target Start/End: Original strand, 42096740 - 42096826
Alignment:
Q  466 agtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgt 552  Q
    |||||| |||||||||||||||| |  || ||||||| |||||||||||| |  |||||  ||||| ||| |||| |||||||||||    
T  42096740 agtcgaacgtgagttaactcacgtagatacattttcaacgtgagttaactcacataggtgcatttttcagcgtgagttaactcacgt 42096826  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 45800318 - 45800248
Alignment:
Q  445 tttttctcatttccatca-aatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaac 514  Q
    ||||||| |||||| ||| |||||||||||| |||||||| ||||||  | |||| |||||||||||||||    
T  45800318 tttttctaatttccgtcataatagtcgagcgagagttaacccacgcacatgtattctcagcgtgagttaac 45800248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 515
Target Start/End: Complemental strand, 56211043 - 56210956
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||||||||||| ||||||  ||||||||| ||||| |||  || ||||||||||||||| | ||| |||||||| ||||||||||||    
T  56211043 tgctcttctctcatatgttttg-ctcatttccgtcaaaatagctga-cgtgagttaactcacacgtgtgtattttcaacgtgagttaact 56210956  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 430 - 574
Target Start/End: Original strand, 52204671 - 52204815
Alignment:
Q  430 tcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatatt 529  Q
    ||||||||||| ||||||  |||||| || ||||||||  ||||||||||||||||| | |||| | |||||| |||||| ||||| | |||| ||||||    
T  52204671 tcttctctcatatgttttcactcattcccgtcaaatagctgagcgtgagttaactcatgtatgtgtgttttcaacgtgagctaactcaggtagatatatt 52204770  T
Q  530 ttccagtgtgaattaactcacgtaggacggaaatgaggaaaaaca 574  Q
    || ||| |||  ||||||||||||||||   |||||| |||||||    
T  52204771 tttcagcgtgggttaactcacgtaggacaagaatgagcaaaaaca 52204815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 36703121 - 36703049
Alignment:
Q  502 agcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaaca 574  Q
    |||||||||||| | | |||||| |||| | ||| ||||||||||||||||||||||| |||||| |||||||    
T  36703121 agcgtgagttaattcacgtaggtgtattcttcagcgtgaattaactcacgtaggacgggaatgagcaaaaaca 36703049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 474 - 517
Target Start/End: Complemental strand, 18360154 - 18360111
Alignment:
Q  474 gtgagttaactcacgcatgtatattttcagcgtgagttaactta 517  Q
    ||||||||||||||||| || |||||||||||||||||||||||    
T  18360154 gtgagttaactcacgcaggtgtattttcagcgtgagttaactta 18360111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 589
Target Start/End: Original strand, 9144153 - 9144240
Alignment:
Q  502 agcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaacaggtgaaagaaaagca 589  Q
    ||||||| |||||| ||| | || |||||||||| || |||||||||||||| | |||||||||  |||||||| ||| |||| ||||    
T  9144153 agcgtgaattaactcatgcaagtgtattttccagcgtaaattaactcacgtaaggcggaaatgaacaaaaacagatgagagaagagca 9144240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 430 - 515
Target Start/End: Complemental strand, 36703162 - 36703076
Alignment:
Q  430 tcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatatt-ttcagcgtgagttaact 515  Q
    ||||||| ||| |||||||  |||||||| | |||| |||||||||||||||| ||||| | || |||| |||||||||| ||||||    
T  36703162 tcttctcccatctgtttttgttcatttccgttaaattgtcgagcgtgagttaattcacgtaggtgtattcttcagcgtgaattaact 36703076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 515
Target Start/End: Original strand, 20991593 - 20991646
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||| ||||||||||||||| ||| || || |||| ||||||||||||||||    
T  20991593 aaatagccgagcgtgagttaacccacacaggtgtattgtcagcgtgagttaact 20991646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 515
Target Start/End: Complemental strand, 33486987 - 33486894
Alignment:
Q  422 ataactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||| |||||||||||| | | ||||| ||||||  | |||||||| |||  ||||||||||| | ||| || |||||||||||||| ||||||    
T  33486987 ataattgctcttctctcgtctatttttgctcattctcgtcaaatagccgaatgtgagttaacttatgcaagtgtattttcagcgtgaattaact 33486894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 515
Target Start/End: Complemental strand, 35310457 - 35310404
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||| ||||||||||||||||||| || || |||| |||| |||||||||||    
T  35310457 aaatagccgagcgtgagttaactcacacaggtgtattctcagtgtgagttaact 35310404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 531
Target Start/End: Original strand, 17793893 - 17793982
Alignment:
Q  442 tgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatatttt 531  Q
    |||||||  |||||||| | |||||||||||||| ||||||||||   |||| |||||| ||||||||||||||||| ||||| ||||||    
T  17793893 tgtttttattcatttccgttaaatagtcgagcgtaagttaactcatatatgtgtattttaagcgtgagttaacttatataggtgtatttt 17793982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 574
Target Start/End: Complemental strand, 33833519 - 33833366
Alignment:
Q  421 gataactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgt 520  Q
    ||||| |||||||||| ||| ||||||| |||||| |  |||||||| |||||||| ||||||||| ||| || |||||| | |||||||||||| |  |    
T  33833519 gataattgctcttctcccatctgtttttactcattcctgtcaaatagccgagcgtgggttaactcatgcaggtgtatttttaacgtgagttaactcacat 33833420  T
Q  521 aggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaaca 574  Q
    | || ||||||  || |||| |||| ||||||| |||  ||||||| |||||||    
T  33833419 atgtgtattttttagcgtgatttaattcacgtaagacataaatgagtaaaaaca 33833366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 430 - 574
Target Start/End: Complemental strand, 43294710 - 43294567
Alignment:
Q  430 tcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatatt 529  Q
    ||||||||||| ||||||| ||||||||| ||||||||| ||||||||||| ||||| | |  | |||||||| | |||||||| | | ||| || ||||    
T  43294710 tcttctctcatctgtttttactcatttccgtcaaatagttgagcgtgagttgactcatgtagatgtattttcaacatgagttaattcacgtaagtgtatt 43294611  T
Q  530 ttccagtgtgaattaactcacgtaggacggaaatgaggaaaaaca 574  Q
    || |||  | | ||||||||||||| |||||||| || |||||||    
T  43294610 tt-cagcattagttaactcacgtagaacggaaataagcaaaaaca 43294567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 425 - 515
Target Start/End: Original strand, 44540663 - 44540754
Alignment:
Q  425 actgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||||||||||||| ||||||| || ||| || ||||| |||||||| | ||||||| |||||||||| |||| ||| ||||||||||||    
T  44540663 actgctcttctctcatctgtttttgcttattcccgtcaaaatagtcgagagcgagttaattcacgcatgtgtattctcaacgtgagttaact 44540754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 556
Target Start/End: Original strand, 17793993 - 17794087
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtagga 556  Q
    |||||||||| ||| |||||| ||| ||| || |||||||||||||||||||||||| ||||| |||||| ||| || | |||||| || |||||    
T  17793993 aaatagtcgaacgtaagttaattcatgcaggtgtattttcagcgtgagttaacttatataggtgtatttttcagcgtaagttaactaacatagga 17794087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 420 - 557
Target Start/End: Complemental strand, 39556087 - 39555951
Alignment:
Q  420 tgataactgctcttctctcatgtgttttttctcatttccatcaaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaacttatg 519  Q
    |||||| |||| |||||  || || |||| |||||| || ||||||||||||| |||||||||||||||||||| || ||| |  ||||||| ||| | |    
T  39556087 tgataattgcttttctcctatctgattttgctcattcccgtcaaatagtcgagtgtgagttaactcacgcatgtgtaattttaaagtgagttgactcacg 39555988  T
Q  520 taggtatattttccagtgtgaattaactcacgtaggac 557  Q
    ||||| ||||||  || || | ||||||||||||||||    
T  39555987 taggtgtatttt-tagcgtaagttaactcacgtaggac 39555951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 425 - 515
Target Start/End: Original strand, 6620006 - 6620097
Alignment:
Q  425 actgctcttctctcatgtgttttttctcatttccatc-aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||||||||||||| ||||||| |||||| || || ||||||| ||||||||||||||||| ||| || |||| || |  ||||||||||    
T  6620006 actgctcttctctcatttgtttttgctcattcccgtcaaaatagttgagcgtgagttaactcatgcaggtgtattctctgtatgagttaact 6620097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 427 - 531
Target Start/End: Complemental strand, 32016542 - 32016436
Alignment:
Q  427 tgctcttctctcatgtgttttttctcatttccatcaaa-tagtcgagcgtgagttaa-ctcacgcatgtatattttcagcgtgagttaacttatgtaggt 524  Q
    |||||||||| ||| | ||||| ||| || |||||||| ||||| |||||||||||| |||||||| || |||||| | |||||||||||| | ||||||    
T  32016542 tgctcttctcccatctatttttactcgttcccatcaaaatagtccagcgtgagttaaactcacgcaggtgtatttttaacgtgagttaactcacgtaggt 32016443  T
Q  525 atatttt 531  Q
     ||||||    
T  32016442 gtatttt 32016436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 462 - 515
Target Start/End: Original strand, 13387358 - 13387411
Alignment:
Q  462 aaatagtcgagcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||||| |||||||||||||||||| |||| |||||||| | ||||||||||    
T  13387358 aaatagtcaagcgtgagttaactcacgtatgtgtattttcatcatgagttaact 13387411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 471 - 515
Target Start/End: Original strand, 44069891 - 44069935
Alignment:
Q  471 agcgtgagttaactcacgcatgtatattttcagcgtgagttaact 515  Q
    |||||||||||||||||||| || |||||||| ||||||||||||    
T  44069891 agcgtgagttaactcacgcaggtgtattttcaacgtgagttaact 44069935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 505 - 575
Target Start/End: Original strand, 8514003 - 8514073
Alignment:
Q  505 gtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaacag 575  Q
    ||||||||||| | |||||| |||||| ||  || | ||||||||||||| ||||||||||| ||||||||    
T  8514003 gtgagttaactcacgtaggtgtatttttcaacgtaatttaactcacgtagtacggaaatgagcaaaaacag 8514073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 130758 - 130688
Alignment:
Q  504 cgtgagttaacttatgtaggtatattttccagtgtgaattaactcacgtaggacggaaatgaggaaaaaca 574  Q
    |||||||||||| | | |||| |||||| |||||||| |||||||||||| |||||||||||| |||||||    
T  130758 cgtgagttaactcacgcaggtgtatttttcagtgtgagttaactcacgtaagacggaaatgagtaaaaaca 130688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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