View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13720_high_6 (Length: 306)
Name: NF13720_high_6
Description: NF13720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13720_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 40328563 - 40328763
Alignment:
| Q |
1 |
gatgggaagaggtaagattgagatcaagaggattgaaaactcaagcaacaggcaagttacttattcaaagagaaagaatggaatccttaagaaagcaaag |
100 |
Q |
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| T |
40328563 |
gatgggaagaggtaagattgagatcaagaggattgaaaactcaagcaacaggcaagttacttattcaaagagaaagaatggaatccttaagaaagcaaag |
40328662 |
T |
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| Q |
101 |
gaaataagtgttctttgtgatgctcaagtttcccttattctctttggtgcttctggaaagatgcatgaatacatcagcccttccaccacgtaagcgctta |
200 |
Q |
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| T |
40328663 |
gaaataagtgttctttgtgatgctcaagtttcccttattctctttggtgcttctggaaagatgcatgaatacatcagcccttctaccacgtaagcgctta |
40328762 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
40328763 |
t |
40328763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 19142418 - 19142358
Alignment:
| Q |
2 |
atgggaagaggtaagattgagatcaagaggattgaaaactcaagcaacaggcaagttactt |
62 |
Q |
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| T |
19142418 |
atgggaagaggaaaaattgaaatcaagaggattgaaaacactaccaataggcaagtcactt |
19142358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 10225569 - 10225378
Alignment:
| Q |
2 |
atgggaagaggtaagattgagatcaagaggattgaaaactcaagcaacaggcaagttacttattcaaagagaaagaatggaatccttaagaaagcaaagg |
101 |
Q |
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| T |
10225569 |
atggggagaggtaagattgagatcaagaggattgagaactcaagcaatagacaagttacatattcaaagagaaaaagcgggattttaaagaaagctaaag |
10225470 |
T |
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| Q |
102 |
aaataagtgttctttgtgatgctcaagtttcccttattctctttggtgcttctggaaagatgcatgaatacatcagcccttccaccacgtaa |
193 |
Q |
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| T |
10225469 |
aaatcaatgttctatgtgatgctcaagtttccactatcatcattgctccttctggaaaaatgcatgaatacattagcccttctaccacgtaa |
10225378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 8201113 - 8201190
Alignment:
| Q |
47 |
aacaggcaagttacttattcaaagagaaagaatggaatccttaagaaagcaaaggaaataagtgttctttgtgatgct |
124 |
Q |
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| T |
8201113 |
aacaggcaagtgacatactcaaagagaaggaatggtatattcaagaaagcacatgaacttagtgttctttgtgatgct |
8201190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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